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54-0328-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185819 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1305; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4724; Region: intergenic
    Flanking Genome Sequence: 54-0328-1 - 5-prime edge 
    GTCACCCATC CTAGTACTAC TCTCGCCCAA GCACGCTTAA CTGCGGAGTT 
    CTGATGGGAT CCGGTGCATT AGTGCTGGTA TGATCGCATC CGTTAGTATA 
    TGCAATGCAA TCGTATATAT TCTTTTTTGA AGACTTGATG AACCATTCGC 
    CGTGGGTCCC ACCCGCTATG TAGGGATACC CCATCTAGTC TTAATNGTNA 
    TTACACGCCT NATAAACCAA AGATGCCNAN NGNGGGCATA TNNNTTGNNN 
    GGATTNAANA TC

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR