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54-0330-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10164112 [Map]; Strand: w
      • AT5G28180.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 169; Region: intergenic
      • AT5G28190.1 - [+] show detail - unknown protein; Has 45 Blast hits to 34 proteins in 11 species: Archae - 0; ...
        Distance: 3738; Region: intergenic
    Flanking Genome Sequence: 54-0330-1 - 5-prime edge 
    GTCANNCTTA CANGGACTAC GTATCNCNCT TGGNANCANN GACTGCGAGN 
    GTGAAGANAN NANCCAAGTG CTTNATANGC TGGTANGATC CGNGTTCAGA 
    TGGANATACA AGGCTATNTT GTATANAGAC TCCANGNGAC NTGATNAANC 
    ATNACACNNC CCGGTCNCAC NNAATGTGTA GGGATACAAC NNGCTTTACT 
    TGGAAAAGNT ATCATNAAAA ATTCTAAAGC ATACTTATTA CNGACAAAGA 
    TTTCGTACCA NTNTACAAGC ANNTGCNGNN GCAAAGATNA AGAACTTAAA 
    CAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26452923 [Map]; Strand: w
      • AT5G66190.1 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: exon1 (CDS)
      • AT5G66190.2 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-0330-1 - 3-prime edge 
    CCTCCAAGTC ATCCTCTCTC CCCACCAAAA TCTCCTCTGT ATCCCCTCAA 
    AGGATTTTCC TCAAGAAGGT ATCATTTCCA TTTCCATTTC CATTTCGTTT 
    ATCATGTTTN AATTAATCAC TAATTGTAAA GCTGGATCTT GACATGCATA 
    ATTGCTATTT ATCTCGTGCA CCNGCATNTT TTTTTTNTTT GTGTNACAGA 
    ANAGTNGTGT CAGTGAAGGC TCAGGTGACA ACTGATNCTA CCGAGGCACC 
    ACCAGTTAAA GTAGTCAAGG AGTCTAAGAA ACAGGAAGAA GGAATTGTTG 
    TCAACANATT CAAACCTAAG AACCTTACAC TGGTCGCTGC CTTTTGAA

AT5G28180.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G28160.1); Has 1351 Blast hits to 1291 proteins in 95 species: Archae - 4; Bacteria - 70; Metazoa - 262; Fungi - 0; Plants - 990; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28190.1

Model type
Protein coding
Computational Description
unknown protein; Has 45 Blast hits to 34 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 7; Viruses - 2; Other Eukaryotes - 33 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66190.1

Model type
Protein coding
Short Description
ferredoxin-NADP(+)-oxidoreductase 1
Curator Summary
Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.
Computational Description
ferredoxin-NADP(+)-oxidoreductase 1 (FNR1); FUNCTIONS IN: oxidoreductase activity, electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, poly(U) RNA binding, NADPH dehydrogenase activity, electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: oxidation reduction, photosynthetic electron transport chain, defense response to bacterium; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66190.2

Model type
Protein coding
Short Description
ferredoxin-NADP(+)-oxidoreductase 1
Curator Summary
Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.
Computational Description
LEAF FNR 1 (ATLFNR1); FUNCTIONS IN: oxidoreductase activity, electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, poly(U) RNA binding, NADPH dehydrogenase activity, electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: oxidation reduction, photosynthetic electron transport chain, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Ferredoxin--NADP reductase (InterPro:IPR012146), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.3); Has 7407 Blast hits to 7407 proteins in 1806 species: Archae - 24; Bacteria - 3962; Metazoa - 817; Fungi - 811; Plants - 610; Viruses - 0; Other Eukaryotes - 1183 (source: NCBI BLink).
Link
InterPro Scan - TAIR