1. Home
  2. Mutant Lines
  3. 54-0353-1

54-0353-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17858547 [Map]; Strand: w
      • AT1G48325.1 - [+] show detail - Expressed protein
        Distance: 825; Region: intergenic
      • AT1G48330.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -5290; Region: intergenic
    Flanking Genome Sequence: 54-0353-1 - 5-prime edge 
    TTGACAAGTG GCATTAGTGA CGAATTTTGG ACGAAACAAT TAGTATGGCT 
    AAAATATTAT ACCCACGTAA TCGTTAAGAC CCATTGGGCT GACAGAAAAC 
    TAACCCATAT ATCTATATAT GTTGAGGCAT AAAGCCCAAT AATGTGGAAG 
    CCATTTTGCA AAATATCTAT GATGAATGAC AAGATCCAAT TCCTTCAGCC 
    TATTCACAGC GGATGATCGA GGGGTTGTTG TTCCATATAT TATTTCGAGA 
    ACGTTTTTTA ACGTTATCAA ACTTGATCAT TAGGTTATAG CTATACTAGT 
    GAATGGCAAT GTCTACTCTG CGACGCTGCG TAGCGCTTCT TCCCCTCACT 
    CTCCTTTCCC TAATTTAAAA ATCGAGTTGT ATCATCTTTA CCATGGGATT 
    TAACGAAAAT TGTTAGTTAT TCATGGACAA CGGGATACAA CTCTATTTTT 
    AAATCCACTA TAGGTAAATA CTGTCAAAAT TTTAATGAAG GAATTGTGGA 
    CTTGATCGAA ATTTTGTGTG GAATTTTATG GCGCAGACAA ATGTTATATA 
    ACGATTGCTT TGGAACAATG ATAGCTTTTC TATATACAGA ATTATTCTTA 
    ACTCGATCTT TCATCATGTA AGAGATTACT AAATGATGTC TACATTTTTG 
    TATTTCATAA AATATATGCT CCGAATCGTT TATTTTAATT TAAAATATTT 
    ATCTATATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20188642 [Map]; Strand: w
      • AT3G54530.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1057; Region: intergenic
      • AT3G54540.1 - [+] show detail - general control non-repressible 4
        Distance: -1163; Region: intergenic
    Flanking Genome Sequence: 54-0353-1 - 3-prime edge 
    CTNGTTNAAN GGAANATATT TTTTGATTAG GAAAANGTTG ATTCACCTGA 
    AAAAGGACTT TAAAAAACCC GTGGGTACCC ATTACCCAAT GAGGTANAC

AT1G48325.1

Model type
Protein coding
Short Description
Expressed protein
Computational Description
Expressed protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G48330.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54530.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54520.1); Has 159 Blast hits to 159 proteins in 50 species: Archae - 2; Bacteria - 26; Metazoa - 55; Fungi - 5; Plants - 20; Viruses - 2; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54540.1

Model type
Protein coding
Short Description
general control non-repressible 4
Curator Summary
member of GCN subfamily
Computational Description
general control non-repressible 4 (GCN4); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: general control non-repressible 3 (TAIR:AT1G64550.1); Has 605377 Blast hits to 341410 proteins in 3920 species: Archae - 11643; Bacteria - 492389; Metazoa - 10210; Fungi - 6724; Plants - 5978; Viruses - 55; Other Eukaryotes - 78378 (source: NCBI BLink).
Link
InterPro Scan - TAIR