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54-0386-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 334352 [Map]; Strand: c
      • AT4G00760.1 - [+] show detail - pseudo-response regulator 8
        Distance: -875; Region: promoter
      • AT4G00780.1 - [+] show detail - TRAF-like family protein
        Distance: -380; Region: promoter
    Flanking Genome Sequence: 54-0386-1 - 5-prime edge 
    CCCAAAACCC GTCTAACTTC AGAGCTGGTG TGAGTCTTCA AGTCATATGG 
    GTCCTGAGGT CTCTCCCCAA AAGTTAAGTA TCTTATCTAC TAATCTCTCA 
    CTGTTCTCTG AGTCATTCCG GAGGAAATTC GTATCTACTA TACATTTAGT 
    ACCGAATGGA TGTATATTCA GTATTGGATA GTTAAACTTG TTCCTTAAGA 
    AAAAAAGAAA TCGAGTTCAT GGACTGAGAT TTGCAAACGA GGTCTTATCA 
    TATCTTCTTG TAAAATACCC GATCGGGTTC TGTTCTCAAA TAATTTCAGG 
    TATCAGGTAT TACATGAACC GAAATTGATA TCCGTGAGTA TTTTTTATTA 
    CCCGAACATA TATATACATA TGAGGACATA TATACTGATA ACTTGAGTTT 
    GTGAATTGTT TAATGATTGG ATTATGGAAC AAGTTAAAAA AAAGGTTTAC 
    TTCTTGTTTT TTATTATTGT CATAAATGAA AACTTCTTAT AATTTTATGG 
    ATAGTTTTAT ATATGTTTGG GTATATCTGG ACAAGGTTTG GGTAAATAAT 
    ATTGAAACCC AAAATAATTT TGGTTATTTA TTGGGTTCTT CAACCTATAC 
    CCGAAGAGAA CCTATAGCTT AAATAATACG TATAATCGAA CCAGTCTTAA 
    ACTTCTAAAC CGAACCCGAA AGACTCGATC CAAACCCGAC CCGAATACCC 
    AAATTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 334468 [Map]; Strand: c
      • AT4G00760.1 - [+] show detail - pseudo-response regulator 8
        Distance: -991; Region: promoter
      • AT4G00780.1 - [+] show detail - TRAF-like family protein
        Distance: -264; Region: promoter
    Flanking Genome Sequence: 54-0386-1 - 3-prime edge 
    GTTTTGGGTC TCCGGGTCAA GTTTAAAGAA AAAATGTTAA AGTAGATTTC 
    CCTTTCTACT TTGGTTTGAG ATGAGTTTAG AATTTAGTTC GATGTTACGA 
    ACAGTGAATA TATACCCAAA ACTTGTGATG TATATAAATG CTTATCAATC 
    TCGAATCTCT CTGTTACTGT AGCGTGTAAT CCACGTTTGA AGTTTTTGTT 
    CGATTCGATA AATGTTGGAG CCAAAACAGA GACATCAGCA AAAACATGGG 
    ATC

AT4G00760.1

Model type
Protein coding
Short Description
pseudo-response regulator 8
Curator Summary
Encodes a response-regulator like protein.
Computational Description
pseudo-response regulator 8 (APRR8); FUNCTIONS IN: two-component response regulator activity, transcription regulator activity; INVOLVED IN: regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 2 (TAIR:AT4G16110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00780.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT4G01390.1); Has 760 Blast hits to 681 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 739; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR