1. Home
  2. Mutant Lines
  3. 54-0414-1

54-0414-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2395606 [Map]; Strand: c
      • AT1G07725.1 - [+] show detail - exocyst subunit exo70 family protein H6
        Distance: 0; Region: exon1 (CDS)
      • AT1G07728.2 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G07728.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-0414-1 - 5-prime edge 
    CTCCGANACT ANTGGGTGGC GAATCNCTAT GTTCNANTGA ANCACTNNCT 
    CGAGANATAC GAAAAANTGG CCTGGGGGGA TGTGATAGCG TCGCTCCCCG 
    GTGATTCAAC GGCGGGGACG GAGGCGGAGG AGTCTCTGAG ACGGTTCAAC 
    GAGGCGTTCN AATANGCTTA CAAGAAGCAC AAGACATGGG TCGTACCCGA 
    CCCGAACCTG AGAGACGAGA TCCAAGCGTC CATAGCGAGA AAACTAATGC 
    CCGGGTATAC GGGTTTCTAT AAGAAACACC CGGTCGGGTC ATGCAATATT 
    GTCAGATTTA CCCCTGAAGA TCTAAATAAT TACATAACCG ACCTATATGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19718164 [Map]; Strand: w
      • AT5G48620.1 - [+] show detail - Disease resistance protein (CC-NBS-LRR class) family
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-0414-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCGT 
    GCAGATTCGT CCATCTGTAA AATATTCCCA TCATGTGGCT GAAGTTCTTG 
    CAAGATCCTC TGCCAAACAT GTTTCTGTGT AAATTGTTGC GAAACACAGA 
    CCCATGCGAA TCCATCAAAG TGACGCCGGA CTAAATCATG ATGAAAGACT 
    TGTCTAGCTA GAGTGGTTTT ACCAATACCG CCCATCCCAG ATATAGAAAC 
    CACTTGATAG ATATCATTCT CCACCAAATG ACCAACCAAT TCTTCAACAC 
    TCTGCTCCAC CCCGACAAGA TCGCTTTCAG AACTGTCAGG ATACGTTTGT 
    CGGATCTCCC TCTGCACCCT TTGTCTTTCC TGAAGAGACA GCGAACGACC 
    ACCATCAATG ATTTGCTGTA TCCCAAAACT CTGCATTTCC CCAATCACTT 
    CAGAGATCCT CTTAGTTATA CCCTCGATAT CTGAAGCAAC TTTGTGGCGA 
    TCCGTTAAGA AGCGAGCAAG TCGTCTCACA TGCTTCTTGA CCCCTTTTCC 
    TTCTCCTCTA AGTTTGTTCA GAACATAGGA TTCAATTATA TCCTCAGCAT 
    CAAAAACAAG GTCTTTGACA TCTTCCAAGA AGTTCCTCAC CCTATCACTT 
    CCATGTTTCT TGGCATCTGC ATCTTTCAAC AGCGACTGTA AACTTCTCAG 
    CTGACGCTTT AGTCCATCAA TTTGCTCATC AACTCCCTGC AATCTCTCTG 
    ATTCTCGACT CANGAGATCC CAAAGCTAC

AT1G07725.1

Model type
Protein coding
Short Description
exocyst subunit exo70 family protein H6
Curator Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description
exocyst subunit exo70 family protein H6 (EXO70H6); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: exocyst; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H5 (TAIR:AT2G28640.1); Has 846 Blast hits to 838 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 47; Plants - 645; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G07728.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G07725
Link
InterPro Scan - TAIR

AT1G07728.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G07725
Link
InterPro Scan - TAIR

AT5G48620.1

Model type
Protein coding
Short Description
Disease resistance protein (CC-NBS-LRR class) family
Computational Description
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43470.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR