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54-0426-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2943571 [Map]; Strand: w
      • AT1G09140.1 - [+] show detail - SERINE-ARGININE PROTEIN 30
        Distance: 0; Region: intron10 (CDS)
      • AT1G09140.2 - [+] show detail - SERINE-ARGININE PROTEIN 30
        Distance: 0; Region: intron10 (CDS)
    Flanking Genome Sequence: 54-0426-1 - 5-prime edge 
    ANNNNGNNAA NNNNANAGNN NNNNNGNNNA GGGNNNANNA AANTTAAANN 
    NNNCGTTTCN NGCNGGNGAC NCCGANCTTC CCGANTGCNG GTGNANNCAC 
    GGCNAATGAT NGAGGACATG CCTCANAAAT CCATCTTCCC CCTTCCGATA 
    NAAATAAATT TTCAAAAAGN GAAACATCTA NCTAAGTGTT CTTTAAATGA 
    TAAGTCGGAT AATGAAGATT GATACGTAAT AAATTCACCG TCGCTGGAAA 
    AAAGTTAAGA AGTAAAGCTT TTATCANAAG GAAACATCCA GAANAGAACG 
    ACNNAANGAG AAAGGANAAG GACTAAATAT GATGGGAGCA TCTANGTCAN 
    GAACNCAAAA CATAAAAAAC AAANACATCN CACCNNGTAN AAAACNACAA 
    CGGANCGGAA NANATATNGN GNCNACCCNN CAAAAGANAG GGNAGNNGAN 
    NNGGGAGNNA NAGGGNGGNN GTGNATNGAA TGGCNNGTGT NNNAGNGNNC 
    GNCGGNAGNA NACNNNCCGG ANGGGGNANC GNCANCNNGN CNCNNAAGNN 
    NNCCCNGNGG GNNAGNNTCC NGNCANCGAG GTNAGCCNNG GNGNGCNAGG 
    ANTCNCTNNG NNGGTGNNAC NNANAACTNN NCACNCTGNA TNANCNAANN 
    AANNAAGGNN NNNNGNGNCN NNACNNNNAA ACGATNTTNN CCNGANAAGN 
    NNGNAAANNN ANNACCNNCA CCCANNATCA CCANGNGNAC AGGNNACNAN 
    NGGAGATNCN TTCANTNCAA NNNANNNNNA ANCTCCNACC ANCATANCAN 
    TGNCNNAGNN NNNTNGCCCN AACCGAANNA GNNNGACCAA TCATGGGNCN 
    NTCCCNNANN NTAANGAGNN GCTNCNNGNA NTGNCNNNNN AGATTACNNC 
    NNGTCCTNNN CCACNNAANN NNNG

AT1G09140.1

Model type
Protein coding
Short Description
SERINE-ARGININE PROTEIN 30
Curator Summary
Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed.
Computational Description
SERINE-ARGININE PROTEIN 30 (ATSRP30); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3); Has 10547 Blast hits to 8837 proteins in 431 species: Archae - 0; Bacteria - 274; Metazoa - 6368; Fungi - 1180; Plants - 1529; Viruses - 86; Other Eukaryotes - 1110 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09140.2

Model type
Protein coding
Short Description
SERINE-ARGININE PROTEIN 30
Curator Summary
Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed.
Computational Description
SERINE-ARGININE PROTEIN 30 (ATSRP30); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR