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54-0440-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19621978 [Map]; Strand: c
      • AT2G47940.1 - [+] show detail - DEGP protease 2
        Distance: 0; Region: intron1 (CDS)
      • AT2G47940.2 - [+] show detail - DEGP protease 2
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-0440-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT ACTTTCCCCA CCTCATAAAC TCTTCAATCA 
    ATTCCCCCTT CGTTTTTTCT TCTTCTTATA TGGTTGGAAT TATTCGTTGC 
    AGAAGAATTA CCCAGGTAGA GTTCGAGATG AAAGTTCCAA TCCTCCTCAA 
    AAAATGGCTT TCAAGGCTTT TGGGTCACCC AAAAAGGAGA AAAAAGAGTC 
    TCTTTCTGAT TTTAGTCGAG ACCAACAGGT TTGCTTCCTT CTCCTAGTCG 
    GGCATTTGTA TTTCCTGTGG TCTAATGCCA TTTCCTTGTG CAGACTGATC 
    CTGCCAAGAT TCACGATGCA TCCTTTCTCA ACGCTGTTGT CAAGGTTTCG 
    AAATCAAATT CGCTTTCTTC CTTAAAATTC ACTCTGCTTG CTTTTGAACC 
    CACCCGTGCT TCTTTCCAGG TTTATTGCAC TCATACTGCT CCTGATTACT 
    CCCTCCCATG GCAGAAGCAA AGGCAATTTA CTAGTACTGG AAGGCAAGCT 
    TTTTTTTTTT NANNGNNAGG GGNNGCNNTT TTTTNNNNTT TTNNGGGGGG 
    NNNAAGNNCN C

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19621984 [Map]; Strand: c
      • AT2G47940.1 - [+] show detail - DEGP protease 2
        Distance: 0; Region: exon1 (CDS)
      • AT2G47940.2 - [+] show detail - DEGP protease 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-0440-1 - 3-prime edge 
    CTTNAATACG GCNGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CTCTGGGTTT AATATAGGAG ATGGTGAATC AGACCTCGAC GATTTCCTCT 
    TAATATTGGA GGAAGCTCGG GGAGTCAACG ACGATGCGGA CACGAAACAC 
    CACGGTGAGG AGATGGACGA AGATTGAATT TTAACGGAGG CATTGAGGAC 
    GGAGAAGCAG CAGTTTGCTA CGGAGGCGGC CATATCGGCC GGCGAGAGAG 
    ACACACAAAC TACAGAGAGA AGTGAGAAGA AAGAGAGAAA AAGAGAATCC 
    TTTTTTTGAT TTTCTTATCC ACTCTCGCTT CTTTGGCGCC TCCATCTTCA 
    CTTGACCCTG CTTCTTCCCC ATATTTTCAT AATTACCACT GGGTCCTAAT 
    GGGCCCCCTT TTAACATTAA TGGGCCTATT TTTTGCTTTT ATTTTATGGA 
    GCTGCCCATT TCACAACCAC CAGATGAGAA TGAATATCAT ATGCTTTCCA 
    GTTTCCACAA ACCACAAACA TACGTATATG GCTTTCTTAT AAACTACAGT 
    TCANCAATAT TATCTATTAC TTTCAAATAT TTTTAGACAA GGTTGAATAT 
    ACATTTTAGA AATCTTTTTT CACGTATNAA CAAATTTAGG TATGATAACT 
    GATAAGTAAT CCTTTNTGTA TCTGCACTTA TGATCGNTCT CNTTCCAAAA 
    ACCTTATTGA TTACCTATAT TCTCTCTCTC TTGGGGTTAC CTTGGATAAA 
    TGATTNTATN CCGTATTTTA ATTCTTNA

AT2G47940.1

Model type
Protein coding
Short Description
DEGP protease 2
Curator Summary
Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.
Computational Description
DEGP protease 2 (DEGP2); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: chloroplast stromal thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 9 (TAIR:AT5G40200.1); Has 15046 Blast hits to 15035 proteins in 2533 species: Archae - 101; Bacteria - 10614; Metazoa - 317; Fungi - 14; Plants - 376; Viruses - 0; Other Eukaryotes - 3624 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47940.2

Model type
Protein coding
Short Description
DEGP protease 2
Curator Summary
Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.
Computational Description
DEGP protease 2 (DEGP2); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: chloroplast stromal thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 9 (TAIR:AT5G40200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR