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Mutant Lines
54-0455-1

54-0455-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 10690248 [Map]; Strand: c
- AT4G19640.1 - [+] show detail - Ras-related small GTP-binding family protein
  Distance: -631; Region: promoter
- AT4G19645.1 - [+] show detail - TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
  Distance: 0; Region: exon7 (CDS)
- AT4G19645.2 - [+] show detail - TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
  Distance: 0; Region: exon7 (CDS)

GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCTT GTGTTTTACC ATGTCTACAC ACATTATGAT 
CAGGTAATCA AGATTTCGGT TTGATTATCT CTAAACCAAA CGGTCTAGCC 
TTTAGGAAAA ATAGGAATTA CTCTGTTTTT TTTTTTTTTT TNGGGGGGNT 
TNGGGNGGGG TTAAAAAAAA ANAANNGGNN AAAAAGGGGT TTTTNGGGGG 
GGGNAAAAAA NNCNNCCCNT GGGGTTTTCN CGGGGTTTNG GGGGCCCCNT 
TTTNTNGGGG GGNAAAAANN TNNNNGGGGN GGGGAAAAAA GGGNGGGGGN 
NNAAAAAAAC NNTTNNAAAA AAANNGGGNA AAAANNNGGG GGNTTTTTTT 
TTTNGNAAAA AAAAANCCNT TNNAAAAAAN TNNCNNNGNT TTNAANCNNN 
AAAAAAGGGG GGGGGNTNAA NCTTTTNNNN TANNCCCNAA NTNNNNGAAA 
AAATTTTTTC CCNTTTTTNC CNNAAAANNC CCTTNGGGGG GGGNAANNTN 
AAANCCNGGG GNNAAAAAAN NNGGGGGCTT NCCCCNAAAA NNNNGGGGCC 
NAAANNNNNN NGGGGNCNNA AAANNNTTTN GGGGNTTTTT GGGGGNNNNN 
AAACCCNGCG GGAAAAANTG GGNNACCNGG NTTTTNGGGG GNNNNNNAAA 
AAAAAGCCCC TTTTTTTTGG GGGGGGGGGG AAATTTTGTT TTTTTNAAAA 
ACCCCNNNCC CCCCCCAAAT TTTTTTTAN

3 prime edge [+] show sequence

Chromosome: 4; Position: 10690248 [Map]; Strand: c
- AT4G19640.1 - [+] show detail - Ras-related small GTP-binding family protein
  Distance: -631; Region: promoter
- AT4G19645.1 - [+] show detail - TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
  Distance: 0; Region: exon7 (CDS)
- AT4G19645.2 - [+] show detail - TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
  Distance: 0; Region: exon7 (CDS)

TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATAATA 
ACATGTAGAT GAACAGAAGA ATTCTTGCTG TCTGCAAACA AAACATCATT 
GCTATAAAAA AGGAGATCAA GTTTTCAGAC ATTTACAACG AAAAACAAAG 
GTTTTAAGAA ACTCACCAAC CAAGCAAAGA ATATAGCAAC TCCATTAACA 
AGATAAGCNT TTAGATCGTT TCAAACCAGC AATGTCAAGG TACCATCTAA 
GATTGATCTC TGGTGTAGTC ACTTCAGAGA TTAAAACCAT GTATGTGTAA 
AGCTGAGCCT CTCCAGAGAA CAAAGAATAC GCTACTGCTG TTCCAGATAA 
GCAGTGATGT AATATCTGAA ACAAAAAACA CAAGATTGTC AAGTAATTGA 
AGACCACATA AGCTTTCATG TGTCTAACTT ACATATTCTG ATCCTCCTAA 
AGAAGGGTAT AACCAAAAGA TCATTCCAAG ATCCGCAAGA AAGTAACCAA 
CTGATACCTA TGCAAAAAAC ACATCACAAC AAAGNACCAT ATAAGTTGAT 
CAATGCTCAT GAGTAGGACT TGTGAGATAA AATGAAGAAA GATCAAAACT 
TACTCCTAAA CCAAAGGTAG ACAGAGGCGA GTTACGAAAC ACCGTAAGGG 
TTTCAAGGCT TCTTTGGTCA GAAAACAAAT CNCANAANAA CGCAAAGTTA 
ATGCCNNGAA TGAAATAAAG ATCGGTGGGA CTGNANGAGA TTCCCCTGTC 
AAGCCAAAGT GNTAAGAAAC TAGANCNTG

AT4G19640.1

Model type: Protein coding
Short Description: Ras-related small GTP-binding family protein
Curator Summary: Encodes Ara7.
Computational Description: ARA7; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab5-related (InterPro:IPR015599); BEST Arabidopsis thaliana protein match is: RAB homolog 1 (TAIR:AT5G45130.1); Has 26416 Blast hits to 26384 proteins in 719 species: Archae - 27; Bacteria - 133; Metazoa - 13862; Fungi - 3690; Plants - 2969; Viruses - 20; Other Eukaryotes - 5715 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G19645.1

Model type: Protein coding
Short Description: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
Computational Description: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT1G31300.2); Has 553 Blast hits to 553 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 150; Plants - 160; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G19645.2

Model type: Protein coding
Short Description: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
Computational Description: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT1G31300.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR