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54-0465-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2633114 [Map]; Strand: c
      • AT3G08660.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon4 (CDS)
      • AT3G08670.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -614; Region: promoter
    Flanking Genome Sequence: 54-0465-3 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG GNTCACCTTT TGCCGGTTTT CTCCACCGAA 
    TGTCGCGATC CTTCCAATTC CTTTGGACAG NGACGTCAAG AACGTTCCAC 
    CATTATTACC AGGATTTCTC CATCATCTCA TGTTTCATCN AATTATGTTC 
    TTTCTCTAAC TCGCTCACTC TCACTCTCAT CCTTGATATT TCCAGCTTCA 
    GCTCTCTGTT TTCTCTCCTC AACGCTGCAT ACGTGTCTCT TGGCGAAACC 
    GCTCGGCTTT GTACTCCAGA AGGCAAAACC CACGACCCTT CTTCTGAATC 
    TCCCGACAGA GCTTTCTTCA GTCGCAACTG TTCTGTGTAA AGCACTCTAA 
    CCACCATTTG TACAGGCAGC CGATCGTTTT GTGCCACGTG GTTGCTTGCT 
    TCTTGTGAAA GTTTCTTGCA GTCAATGAAG TTGCATAGCT TCTTGCGTTC 
    TTCGTCTGTC AATAATGGAT GAGCCTAATT TCCATATTTG ATTATCAGTT 
    TCAGATGTTT TCAAAACATA AAAAGACTTT GTTCAATTGT GTTTTTGTTT 
    ACCTTGAGAT ACATATCAAT GGCTCTGTAG ATCCCATCGT CAACGATACG 
    TGAGTGTTCG GGTAGTGTCT CTATAATAGC CGTAAACTTG TGTAGACTCA 
    GGTATGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2633167 [Map]; Strand: c
      • AT3G08670.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -561; Region: promoter
    Flanking Genome Sequence: 54-0465-3 - 3-prime edge 
    CCGGAAATCA AGGTCGGTGT CGGAGAGAAA ATCAAGTAGA AGCGGTAGAT 
    AAAAACGTCA CCGTTTATGT GGTTGCTATC TAAACGGAGA CAAGTCATGT 
    GTAACAGGAT GAATAATGGG CCGGGAGGAG TGTGAAGTAG GCCCATTAAA 
    AAACAAAGAA AGGTCTCGTT TTCAGCCTAT AAAAACAAGG AAAACATGGG 
    ATTAAATGGG GTCCGGTCCG AGCCGTCTTT GTCCATATTT ATCTTGATAA 
    GAAAAGAAAT ATATAAAATA AGTATTTTTT TAAGAAAGAT ATTAANACAG 
    TAAAAATGNT TATAAGTGTT GGCCGTTGTA CACGGNTAAG TTGTTTTGTT 
    AACTANTGTA AAATNTGGNT TTCTGATANG TTTCCGGAAA TAGNCNTTNN 
    CCTNTAACTT ANAANATNAT AAAAAGATGN NGTTAANTNT CCCCTTCTAA 
    NNTTACTAAT NTTANAAAGA GANNTACCTC GGTGGTGGTT TAACTNATTC 
    CCNNTACATN GAACCATNNN TGATTTATAG CGTTANTNTT NATNTTNCCC 
    AANCANTNNN GNAATACTAC NCTTCACTTC NTTCNGNCTN NTAATTNNNC 
    TCTTTCATTT CNTNANCCAN CACATTTTNT TTTNNTCCGC TTTAATNATT 
    NNANCNNNNA TCNNANNGTN ANNATANCCA NNGGTTNNNN ANNNTCCNTN 
    NGNCATTTGN TANGNTNNCA CCAAACTTCN TACNTTTTNN NANTCGTCTN 
    GNC

AT3G08660.1

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus, N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G08570.1); Has 956 Blast hits to 919 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 68; Fungi - 0; Plants - 886; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G08670.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51540.1); Has 48380 Blast hits to 29827 proteins in 1356 species: Archae - 46; Bacteria - 5589; Metazoa - 17361; Fungi - 13192; Plants - 2237; Viruses - 905; Other Eukaryotes - 9050 (source: NCBI BLink).
Link
InterPro Scan - TAIR