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54-0560-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26468265 [Map]; Strand: c
      • AT5G66240.3 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: exon11 (3UTR)
      • AT5G66240.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: exon11 (3UTR)
      • AT5G66240.2 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: exon10 (3UTR)
      • AT5G66250.2 - [+] show detail - kinectin-related
        Distance: -268; Region: promoter
      • AT5G66250.1 - [+] show detail - kinectin-related
        Distance: -270; Region: promoter
      • AT5G66250.4 - [+] show detail - kinectin-related
        Distance: -270; Region: promoter
      • AT5G66250.3 - [+] show detail - kinectin-related
        Distance: -282; Region: promoter
    Flanking Genome Sequence: 54-0560-1 - 3-prime edge 
    CGTCTGTGCC ATGTAAATGA GGCCTCATTT GGCCTTTTGG TTTCAGACTT 
    TGTTGTGGGT TATGCCGGTA ACTTATCCCT TGCACTCTGA TTAATATATA 
    TTTGGGTCTT GTAACATGAA GATAAACCCC AAGTCTTTCT AATGTTGTAA 
    TTCGTGTAAT TTACAAGTTT GACTGTTTCT GACTGATTCT TCCGGGAAGC 
    AATCGATCTG ACTGAGAGCT TGGGTCGAAG TTAAAATGGT GGGCCGGCAC 
    AATATTTAAG TAAAAGCCCA ATAAGGTCCA AACTCTAACT AATTTATAGC 
    AGTTAAGAAA GTTGGTTTAG GGAAACTTTA TGCCAAACTA AATTTATTCT 
    CCTTGGCGTC TTGTTGTGTT AATCCTCNAA GCAAAACGAC CCGTTTCTGT 
    CNCCAAGTCT ACCCGAC

AT5G66240.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G14530.1); Has 21938 Blast hits to 12469 proteins in 522 species: Archae - 46; Bacteria - 4852; Metazoa - 7701; Fungi - 4572; Plants - 2085; Viruses - 0; Other Eukaryotes - 2682 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66240.2

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G14530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66240.3

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G14530.1).
Link
InterPro Scan - TAIR

AT5G66250.1

Model type
Protein coding
Short Description
kinectin-related
Computational Description
kinectin-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17990.1); Has 3699 Blast hits to 3224 proteins in 449 species: Archae - 76; Bacteria - 383; Metazoa - 2012; Fungi - 287; Plants - 250; Viruses - 24; Other Eukaryotes - 667 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66250.2

Model type
Protein coding
Short Description
kinectin-related
Computational Description
kinectin-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17990.1); Has 3697 Blast hits to 3222 proteins in 449 species: Archae - 76; Bacteria - 383; Metazoa - 2011; Fungi - 286; Plants - 250; Viruses - 24; Other Eukaryotes - 667 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66250.3

Model type
Protein coding
Short Description
kinectin-related
Computational Description
kinectin-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17990.1); Has 3697 Blast hits to 3222 proteins in 449 species: Archae - 76; Bacteria - 383; Metazoa - 2011; Fungi - 286; Plants - 250; Viruses - 24; Other Eukaryotes - 667 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66250.4

Model type
Protein coding
Short Description
kinectin-related
Computational Description
kinectin-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17990.1).
Link
InterPro Scan - TAIR