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54-0572-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13371605 [Map]; Strand: c
      • AT4G26470.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: 0; Region: intron2 (CDS)
      • AT4G26470.2 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 54-0572-1 - 3-prime edge 
    NNNGNNGGGG GNNGGGGGNN GGNNGTNNNG TGGNTTTNTT GTNNNTTANT 
    TNNCNNNNNN NNATTGNCGT GNGCCCNGAG ACTTGTTTGG TCCGGGGCNG 
    ACGNNGTATT CNAACGGGTC AANAGATNAC ACGGAGNTAA AGAATNGTAT 
    CAGGAAGCTA GAGATC

AT4G26470.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT3G24110.1); Has 9300 Blast hits to 7546 proteins in 1004 species: Archae - 0; Bacteria - 25; Metazoa - 3748; Fungi - 1101; Plants - 3090; Viruses - 0; Other Eukaryotes - 1336 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G26470.2

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT3G24110.1); Has 6386 Blast hits to 5124 proteins in 870 species: Archae - 0; Bacteria - 22; Metazoa - 2243; Fungi - 905; Plants - 2494; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink).
Link
InterPro Scan - TAIR