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54-0576-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3952693 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -2091; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4489; Region: intergenic
    2. Chromosome: 2; Position: 3621225 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron16 (CDS)
    Flanking Genome Sequence: 54-0576-1 - 5-prime edge 
    CTCCCGGGTA AAGCTACCAT GNCGGNCCGT AAGACCANNC TGTGCCCTAT 
    NGCTTTGNGT CTTNTAACAA GGAAACACTA CTTAGGCTTT TAAGATCGNG 
    TTGCGGTTTA AGTTNTTATA CTCAATCATA CACATGCCAT CAAGTCATAT 
    TCNACTCCAA AACACTAACA TACCTTCTTC TTGCTTCTCA AAGCTAGGNT 
    AGCGGATNNG TANNCAAACA TGGACAAGAT GGTTTGTGTA TNATTTGCAA 
    CTGGATTNCG GAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20880163 [Map]; Strand: c
      • AT3G56290.1 - [+] show detail - unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; ...
        Distance: -595; Region: promoter
      • AT3G56300.1 - [+] show detail - Cysteinyl-tRNA synthetase, class Ia family protein
        Distance: -6; Region: promoter
    Flanking Genome Sequence: 54-0576-1 - 3-prime edge 
    CCCGGGAGAA GTGAAAAATC ATCAGAGTTT TTGAGAAATT CTTCCAAGCG 
    ACGGAGAGAT GTCGGAGATG GAGGTGGAGA AACCGGATTT GACATTGTAC 
    AACACAATGA CTCAACTGAA GGAAGTTTAT AAGCCAGATG AATCCCGGCA 
    AAATCGGAAT CTATGTATGC GGTATCACCG CTTACGATTA TAGCCACATT 
    GGCCACGCTC GTGCCGCCGT GTCCTTCGAC CTCCTTTACA GGTCAGTTCC 
    ATAGTTTTCG CCGTAGGATT GTTGTTTAAT TTGAATTTCT TTAGGTCACG 
    AATTTGGGGA AAAATCCCAA CAATTTAAAA CTAATTTTGT CTATTGTTAG 
    CTTCGATTAA CAATGTACTA AGCT

AT2G08986.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40104.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G56290.1

Model type
Protein coding
Computational Description
unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G56300.1

Model type
Protein coding
Short Description
Cysteinyl-tRNA synthetase, class Ia family protein
Computational Description
Cysteinyl-tRNA synthetase, class Ia family protein; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: cysteinyl-tRNA aminoacylation, translation; LOCATED IN: cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: Cysteinyl-tRNA synthetase, class Ia family protein (TAIR:AT5G38830.1); Has 11222 Blast hits to 10904 proteins in 2870 species: Archae - 213; Bacteria - 6026; Metazoa - 414; Fungi - 276; Plants - 133; Viruses - 3; Other Eukaryotes - 4157 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR