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54-0591-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20687091 [Map]; Strand: c
      • AT3G55730.1 - [+] show detail - myb domain protein 109
        Distance: -3038; Region: intergenic
      • AT3G55734.1 - [+] show detail - MIR393B; miRNA
        Distance: -4556; Region: intergenic
    Flanking Genome Sequence: 54-0591-2 - 5-prime edge 
    NTTCACGTAG AGGCTTAGTT TACATAATCA GTCTATTTTG GTTGTGGAAT 
    TTCGCCTTAT ATATTTAGAA TAAGCATTTA CTCTTCTTTT TTCAAAATGA 
    TTCGAACCTA AACGCAAGTG TCAAGAGTTG ATAAGAAGGT ATTAATGGCA 
    CGTGGCAACA TTAACTTAGT GTCCAATAAA TAGAAGACAA TGTCGTTGTC 
    TTTCCCAATT CCATATCCTA ATTTCAGGGC AAGAGTATGT ATGACTCATG 
    CTAGTGTCGT TTTCTCTTAG GTCTAATTTC AACAAATGAC TTGTATATAT 
    TACGTAACTT TCGTTCACAA TAATGAACAA TCCCAAACTA AAATTACAAA 
    AGTATGGATA ATAATGAAAA CAAAAAAATG TTAAGCAAAA GATTATATCC 
    AAACTATATT ATTTAATCGT TTTATTTTTA AGAAGTATTA GTGAGAAAGG 
    TCCCGGAAAC AGAAAGCATA AATTGCCTCA CCGTCGTTGT CAATTTTGTC 
    GTCACTGAGA CTGCGTCTAC TAGACGTCTC CATCACACGT CGTGTTCATT 
    TTCCTCGTGA TATACCACGA GGTACGTCAT GACTTATATC AAGGGTATTA 
    AGTGTGAGTG GTTTGGAAGG CTGATTATGA TTAAGTAGTA TTTAAAATTT 
    GATGGTGAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20687207 [Map]; Strand: c
      • AT3G55730.1 - [+] show detail - myb domain protein 109
        Distance: -3154; Region: intergenic
      • AT3G55734.1 - [+] show detail - MIR393B; miRNA
        Distance: -4440; Region: intergenic
    Flanking Genome Sequence: 54-0591-2 - 3-prime edge 
    ACGTGAAGTA ATATATACTA TGTTGAATCA ATCTTGAACC CTGACATGTT 
    GATATTGTAG CAAAATTGTG GACTCGTCCA CATGGATTCT CGTGTAAATT 
    ATAATATTAT AACTTGATTT ATTCATATAG TAATTAAACT ATTTAAGTTG 
    ATATCTTTGT TTGAAAGTAA ATAACGTAAT GGTCCCCGTC GAATT

AT3G55730.1

Model type
Protein coding
Short Description
myb domain protein 109
Curator Summary
putative transcription factor MYB109 (MYB109) mRNA,
Computational Description
myb domain protein 109 (MYB109); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 25 (TAIR:AT2G39880.1); Has 8907 Blast hits to 7929 proteins in 513 species: Archae - 0; Bacteria - 2; Metazoa - 870; Fungi - 593; Plants - 5452; Viruses - 6; Other Eukaryotes - 1984 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55734.1

Model type
miRNA
Short Description
MIR393B; miRNA
Curator Summary
Encodes a microRNA that targets several TIR1/AFB family members and one bHLH family member. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCCAAAGGGAUCGCAUUGAUCC. Targets are: F-box proteins and bHLH transcription factor. Specifically cleaves AFB3 transcripts, controlling AFB3 mRNA accumulation in roots in response to nitrate exposure.
Link
InterPro Scan - TAIR