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54-0593-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16286816 [Map]; Strand: w
      • AT5G40670.1 - [+] show detail - PQ-loop repeat family protein / transmembrane family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-0593-1 - 3-prime edge 
    NNNNNNNNGN NNGNNNGNNN NGNGNNNNNN GNGGNNNNNN AATTNAANNC 
    GGNACGANGT TTTNACTCGA CCGTTACCGA CCGTTTTNAT CCCCCTGCGA 
    NNAGTAAGTC ACTGGAAACC ATCAGGAAAA AAAGAACACT GGNGTGGGAT 
    AAAGAGACAA NGGCANGCCT AAGANACAAG ATTACTCACT NCATANATAA 
    ATATCNGGAN CAGTGTAACA GCTGTCATTA CAACTGCNTG GATCGAGAAT 
    GCANCATCAT TNGCAGCCAC AGGTATCNTC TGAAATAAGC AACAATNATA 
    ACAAAACGNC TNANAAACTA ANCCAGCTCG AACAATNTAA AGCT

AT5G40670.1

Model type
Protein coding
Short Description
PQ-loop repeat family protein / transmembrane family protein
Computational Description
PQ-loop repeat family protein / transmembrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603), Lysosomal cystine transporter (InterPro:IPR005282); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR