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54-0596-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16286841 [Map]; Strand: w
      • AT5G40670.1 - [+] show detail - PQ-loop repeat family protein / transmembrane family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-0596-1 - 5-prime edge
    AGCGTGGGCC TCAAAAAGTA TCCAGACTTG CGATAGGTAT TGTGGTTGTT 
    GTGTGGGGAT TTGCAGCTAT CTGTTTCTTC ATAGCATTAC CTACACACTC
    TTGGCTATGG CTCATTTCAA TCTTCAAGTA AGTTGTTGCG CAAAGCCTTC
    TGAACCAATT CTTTTAGTGG TAATCTAACA GTTTTGATGA TAATGGTTTA
    TTTGTTCATT GTTATAGTTC GATTCAGGTC TTCATGACAT GCGTCAAGTA
    CATCCCACAG GTCAGAAAAG ATTCCAAACC TTAATTTTTT TCATTATTGA
    TTGAATCTGC ATTACTCAGA TTTTATGTGT TTGCTTCACA GGCAAAGATG
    AACTTCACTA GGAAGAGCAC AGTCGGGTGG AGCATCGGGA ATATTCTTCT
    CGATTTTACT GGAGGACTTG CTAACTATCT GCAAATGGTT ATACAATCTA
    TTGACCAAAG TAACAATCTC TTCTCTATCA CATCAATAGC TTTTGTTTTC
    TCTGATAATA ACATTTTGAA AGAAAACTTA AACTATCTAT TTCCTTTGGT
    TCTTCCAGAT TCTTGGAAGA ATTTCTATGG GAACATGGGA AAGACTCTTC
    TCTCACTTGT AAGAAAATTG ATGGAGTGTT TTTTTTTGGG TCAATTCTCT
    CTCTCTCTCT AANAACGTNT NAAATGGTTT TAACAAAAAT NAATNT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16286773 [Map]; Strand: w
      • AT5G40670.1 - [+] show detail - PQ-loop repeat family protein / transmembrane family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-0596-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    CGCTGCGAGA GTAAATCACT GGAAACCATC AGGAAAAAAA GAACACTTGT
    ATGGGATAAA GAGACAAAGG CAAGCCTAAG AAACATGATT ACTCACTTCA
    TAGATAAATA TCTGGAACAG TGTAACAGCT GTCATTACAA CTGCATGGAT
    CGAGAATGCA ACATCATTTG CAGCCACAGG TATCATCTGA AATAAGCAAC
    AATTATAACA AAACGTCTCA AAAACTAAAC CAGCTCGAAC AATCTAAAGC
    T

AT5G40670.1

Model type
Protein coding
Short Description
PQ-loop repeat family protein / transmembrane family protein
Computational Description
PQ-loop repeat family protein / transmembrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603), Lysosomal cystine transporter (InterPro:IPR005282); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR