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54-0606-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7387276 [Map]; Strand: w
      • AT1G21100.1 - [+] show detail - O-methyltransferase family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-0606-1 - 5-prime edge 
    GGTCACGCAN TGCACGCCAC GNACAGCCTC NCNCTNCNNG NGCGGATNCC 
    CAGGGTACTC TGAANCAGCC CGGTGACGTC GACCACTNTG TGCANCAAAA 
    AAAAAATTAG TATAAAATNN TAATAGCATG NAGACACTTC CAAAACATAT 
    AANTAATAAG TTACTTACAA AACATGTAAG TAATAAGNAG ATAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8775021 [Map]; Strand: c
      • AT1G24822.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon4 (CDS)
      • AT1G24880.1 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: -880; Region: promoter
      • AT1G24880.2 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: -880; Region: promoter
      • AT1G24880.3 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: -880; Region: promoter
    2. Chromosome: 1; Position: 8789400 [Map]; Strand: c
      • AT1G24938.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon8 (NonCoding)
    3. Chromosome: 1; Position: 8811929 [Map]; Strand: c
      • AT1G25097.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon4 (CDS)
      • AT1G25098.2 - [+] show detail - other RNA
        Distance: -882; Region: promoter
      • AT1G25098.1 - [+] show detail - other RNA
        Distance: -893; Region: promoter
    4. Chromosome: 1; Position: 8826307 [Map]; Strand: c
      • AT1G25175.1 - [+] show detail - other RNA
        Distance: -979; Region: promoter
    Flanking Genome Sequence: 54-0606-1 - 3-prime edge 
    CAAAGGAAGA TGGAGCGAGA AAGATGAATT ACGCTATAGG AATTGATTTT 
    CCTCTTAAGT GCTCAAGTCT CACTTTAAAT TCAACTATCA CGGATGAGCC 
    AAATGCCCAG TCCTAAACAA AAAGATTAAC NTTAGTAATT GATACCTTGT 
    AGAAAGACAA ACCGTGAGAT CAGTGAAAGT GGTAAGTTGC CTGGATATCA 
    CGAAAGTGTC AAGACTCTTC TCTTCACCAT CTTTAATCAT ATCTTCCATC 
    ATATGAATCT TCAGCATCTT GAATTGACGA TCGAAGACAG GCTTGTAGAG 
    ATGACTCAAA CGTGTACCAC AATGGCCTCA TAATATAGAT GCAAGATTAT 
    TATGATTGAA TGACGATTCT TCGGATGCAT ATGTAGGAAT AAACACTGCG 
    TCATACGAGT TCTCATAACC ATCAATTCAC TTTCGAATAG AAATGGTAAA 
    TTTTCATTAC AAACTGATCC AAGCACTTCA AGACCTAATG AGAACAAAGT 
    AAATCAACAC AAAGACAGTG TCCGGACTTT TGATAGGATT TATTTTTTTA 
    AAGGTATTTC GCATATAAAC TTCTTAACAT AGATCTCTAC ATATATAGAC 
    AAAATGAAAT AAATACAAAG ATGTGCTTCA TAAGTTCTCA ACAAAGCCCA 
    AGTAATCTCC ACAATAAGGC TTATTTATAA GTCCTCTAAT CTGAGTGACT 
    TCAATGATTC TTCCN

AT1G21100.1

Model type
Protein coding
Short Description
O-methyltransferase family protein
Computational Description
O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; EXPRESSED IN: stem, cotyledon, hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21130.1); Has 3375 Blast hits to 3370 proteins in 588 species: Archae - 3; Bacteria - 947; Metazoa - 107; Fungi - 659; Plants - 1542; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G24822.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25097.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G24880.1

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25054.1); Has 5321 Blast hits to 5321 proteins in 1417 species: Archae - 0; Bacteria - 2995; Metazoa - 1; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G24880.2

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25054.1).
Link
InterPro Scan - TAIR

AT1G24880.3

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25054.1).
Link
InterPro Scan - TAIR

AT1G24938.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35100.1)
Link
InterPro Scan - TAIR

AT1G25097.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24822.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25098.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G25097
Link
InterPro Scan - TAIR

AT1G25098.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G25097
Link
InterPro Scan - TAIR

AT1G25175.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR