1. Home
  2. Mutant Lines
  3. 54-0616-1

54-0616-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12030503 [Map]; Strand: c
      • AT1G33170.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: 0; Region: exon5 (3UTR)
      • AT1G33180.1 - [+] show detail - transposable element gene
        Distance: -82; Region: promoter
    Flanking Genome Sequence: 54-0616-1 - 5-prime edge 
    GCTTTGAANA ACNNACAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTTCATC CTAATCATAG AAATCTTTTT AAACAAACAA 
    TTAAAAATAA AACAAAGATG AGACACACAA GATACGAAAA AAGATTAGAG 
    TAGAGAGTTC CAAGAAAGCT AGAACTAGCT AAGAAGAAGG ACCGGTCCAA 
    TAGGATTTTA CAGCGAGAAG GATCTTCTCA GGATTAAAAG GACCTTTCTC 
    ATGATCCAAA ATCCGACTCT TCCACCTCAT TCCATTGGTT ATGCTTTGTA 
    TCTTCGTCAA CATTTCCACA GTGTCTCTAA ACACCACGGT TCCTTCTGGT 
    CTCAAAATTC TATCCATCTC AAGTAGTATT AATGTAACAT CACACCTTTC 
    ATCAACAACA ACAACAACAG TAGGATTCAC GTTAGTGAGA ACGCAAACAC 
    AAATGCAAGT GCACAATTTC TAGTACATTA GAATTTTAAG AACAGAAAAA 
    AAAAANATNA CTNAGGTNCC TTTNCTTTTT TNGTTTTTTT AAAATAAAGA 
    TGGCCCATNT TTAAAAGCCC ANGGTTTNCG AAANTGTACA TGGTNTTTTT 
    NTCATNTNGT TNAAANGATA ATATTTGAAA AACATNTTTN NNNTAGTTTA 
    AATTAATTTT NTNTCCCTTG NAAAAGGATN GGNGGTATTN GGANCNCNCA 
    AAATTGGGGA NTNTATTTNA AANAANTTTT TGGGNAATTG GCNAACCCAA 
    NCCNAAAGNT TANCCAGCCG GGGCNCGGGG AACANCCNGG CCCNNNGNNN 
    AAACNAAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12044418 [Map]; Strand: c
      • AT1G33200.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G33220.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: -454; Region: promoter
    Flanking Genome Sequence: 54-0616-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCGCTCATCT CTGCAACTTC TCTAAAGTCT CCTCTGTTTT TGTACCTTCT 
    GCTTTTGCAA TTTCAGCTTT TGTATCCTCT GTTTTTCTTT TAAAACACTC 
    AACACACGGT TGCATTCATT GTACAAAGGA TTTTGATTGA ATAAAATTTT 
    ACATTCTTTC AAAAAAAGAA AAAAAAGTGT AGATAAATAT AACTAGTGAA 
    AAAAGAAAAA ACCGAATTTG TAAATAGATC GACGGCTAAG ATTACACATA 
    GAACCAAAAT AAAAGAATTT TACTATTATA TTGATAGAAT AATACTGGAA 
    ATAGATC

AT1G33170.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G10440.1); Has 1106 Blast hits to 1098 proteins in 101 species: Archae - 5; Bacteria - 135; Metazoa - 1; Fungi - 2; Plants - 950; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G33180.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.5e-05 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Link
InterPro Scan - TAIR

AT1G33200.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to SAE1-S9-protein, blastp match of 28% identity and 4.2e-16 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa}
Link
InterPro Scan - TAIR

AT1G33220.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 5 (TAIR:AT5G20340.1); Has 2095 Blast hits to 2083 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 2086; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR