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54-0626-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 333125 [Map]; Strand: w
      • AT4G00760.1 - [+] show detail - pseudo-response regulator 8
        Distance: 0; Region: exon1 (5UTR)
      • AT4G00770.1 - [+] show detail - unknown protein; Has 127 Blast hits to 120 proteins in 33 species: Archae - 0...
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 54-0626-1 - 5-prime edge 
    ANAANAANNN TTAAAAANCG GGTAAAACTA ACAAANCGGT TATACGATAA 
    CGGTCGGTAC GGGATTTTCC CATCCTACTT TCATCCCTAT ATACAATGTA 
    CATTAACCTC TAAAACCATA TATATATATA TATATGCCTA ATNNATATTT 
    NTGCAAAAAA AGATCAATTT TTAGANGCTA NATCCATGAN CGAGTTAAAN 
    AGNGNCCTNN TTCGANACGA GCACACNACA TNACAGAAAA TAAANGGGTT 
    ANACTTAANA AANTGTCNTT CGCNGGAATA ATTANGCAGC NCGCGTGGAT 
    TCGNGATCGC ANCCATNGAA ATNAAAATCC CTANATCAAA GCCTATNTNT 
    GGGTNTGCGA NACANTGAAG ANGGAATNGA AAAATANNCC GATAGAAGAC 
    NCTGGAGAAN AANAANAAGA NGTATATTGA AAAAAAANNG GANAGAAGNG 
    GGAAATATGN GGGAGACNTN CCCGGGGGTC TNTTTCCNGG GGGGNGAAAA 
    ANCTNCCANC CNGGGCCGTA GNCCCGNGNN NNTTTNTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 333139 [Map]; Strand: w
      • AT4G00760.1 - [+] show detail - pseudo-response regulator 8
        Distance: 0; Region: exon1 (5UTR)
      • AT4G00770.1 - [+] show detail - unknown protein; Has 127 Blast hits to 120 proteins in 33 species: Archae - 0...
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 54-0626-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    TTCATTTGTT TCATTCTTAC AAAAGTAGAG CTAAAAAAAC CTGAGCTTTT 
    AAGTCAAAGC CTTATTCAAA AATGTTTTTG CTTTCTAATT TCTAAAGCT

AT4G00760.1

Model type
Protein coding
Short Description
pseudo-response regulator 8
Curator Summary
Encodes a response-regulator like protein.
Computational Description
pseudo-response regulator 8 (APRR8); FUNCTIONS IN: two-component response regulator activity, transcription regulator activity; INVOLVED IN: regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 2 (TAIR:AT4G16110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00770.1

Model type
Protein coding
Computational Description
unknown protein; Has 127 Blast hits to 120 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 8; Plants - 62; Viruses - 3; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR