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54-0636-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 383392 [Map]; Strand: c
      • AT2G01840.1 - [+] show detail - transposable element gene
        Distance: -4945; Region: intergenic
      • AT2G01850.1 - [+] show detail - endoxyloglucan transferase A3
        Distance: -1807; Region: intergenic
    Flanking Genome Sequence: 54-0636-1 - 5-prime edge
    GTTAAAATCT CTACTGGGCC CACTAACATA TCTAGTAAGC AGACACGCAG 
    TTAACAGCAA TGTTAACGCC GTTAACTCCA TTTTTGGTAA CAGTCGTGTC
    AGAGAAGTCC AATACTTCAC GCNGTAAATA GATACTAATA ATTAGTACTA
    CATGTAAAAT CAGTATCAGT ATTATTTTAA TTTCATATTT GGTGGATGGG
    AAAAAATAAT TTCATTGAGG TCACAACGGT CATCGTCCCA ACAAGTTTGA
    TAGGCGTATT TTAGTGTAAC GTGTGCGAGG TTAATTAGCA TAAGCACATG
    TGAATCTAGT AGTAATTAGA AGATCCCAAT GTGACAATGT GGAATATTCA
    CGTGTGGTTT TTGCATGGGT TTAATCCGCA CGGATCAGTA TGTCATCAGA
    GAGAATCACA GCCGTTGATA TCTTACTTAA ATAAAGCAAT GAGAAAGAAA
    ATTAGAATTA TGTATCAAAC GAGATTGACG TTCTGAACTT TCTTTTCATT
    GATATAGGAA CTAAATAATT TGAATAATGG TTGTTCACAT AATCACATTA
    GTTTAATGTT CTTGTCGATG GTGATTAGAA TCTTTGTAGC AGTTTTCTGG
    AAGAAATATC TCAAGATGTT TGTTGACAAT TTTACCCAAT ACTTTACATA
    TTTCAGTATT GGATATTTTG CTGGTTTAGA AACAGANGTG ATACACT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 383508 [Map]; Strand: c
      • AT2G01840.1 - [+] show detail - transposable element gene
        Distance: -5061; Region: intergenic
      • AT2G01850.1 - [+] show detail - endoxyloglucan transferase A3
        Distance: -1691; Region: intergenic
    Flanking Genome Sequence: 54-0636-1 - 3-prime edge
    ATTTTAACAG TTGTTATGTG CTGACGTGGA CTCATCTTTC TTAACGCTGC 
    TAATTAACTC CGGCACAGGT AACAGTAACC AGTACGACAC CGTTTTTGGG
    GTTGCATTCA TTGGCAGCAC AGAGCCGCGT CGCCAAACGT TAGCGTTTTA
    AAATCCACCC GCTCCACATA TTACTCACCA CGTGTCTTTA TTTAAAACCC
    GCGTTTCCTT CACGCGATTC TCATTTAACG GAGCCGTGAC TTTTTCAAAA
    ATTGTTTACC GTTGGACAAA TGTCTTATTG TCCTCATAAT GTCAGCCTTA
    TTTACGGAAA TACCATTGGA CGGTGGTCGT GAATTTTATT AACAAAGAAG
    GGTATTTTGG AGAATTACAT CAGGGACGGC GTATTGGGGC GGCTAACCCC
    ATCCGACTTT ATATGCACTT TATGGGAAAT TTCAATTAAT TAAAATATGT
    AAAAACTATA AAAATATGAA TTAAAAATTT GAAAATTCAA TGATACGCCT
    TTTATTTTTG ACTGTGAAAG TCTTAAAAAA AATTGTTTTT TAAAAAACCC
    AAATGATTCA CCTTTTNTTA AAATGTACCC CGTTTGTCTT CNAGGAGAGA
    TCTCTGGTCC ACAACTTTTT TNTTAGACAA CTCAAAAAAA TTATATNCTT
    TNCTTTTNCT GTATGGNATT ATGAGTTGTT ATTTGGTATT NTTNGNACTN
    TNTCCCTTTT NAANAA

AT2G01840.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.6e-34 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT2G01850.1

Model type
Protein coding
Short Description
endoxyloglucan transferase A3
Curator Summary
EXGT-A3 has homology to xyloglucan endotransglucosylases/hydrolases (XTHs). Mutants in this gene show a lesion mimic phenotype associated with leaf maturation and a reduction in the number of tertiary veins. Individual tracheary elements in the mutants are shorter, but phloem transport activity is not severely affected. EXGT-A3 plays a role in xyloglucan degradation in the differentiating tracheary elements of rosette leaves.
Computational Description
endoxyloglucan transferase A3 (EXGT-A3); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: phloem or xylem histogenesis; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 28 (TAIR:AT1G14720.1); Has 2101 Blast hits to 2091 proteins in 291 species: Archae - 0; Bacteria - 238; Metazoa - 0; Fungi - 449; Plants - 1341; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Link
InterPro Scan - TAIR