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54-0677-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 540980 [Map]; Strand: w
    Flanking Genome Sequence: 54-0677-1 - 5-prime edge 
    AAAATCAGTA TATAAAAAGA TCATTCACTG TGTAGATGAA TAGTATATAG 
    CATTGGTATT TGTAATGTAG ATGTTGGTTA AATAATACCT CTTTAAATAA 
    CAACCTAGGG AATGAATAAA ATCCAACATA TCTAATTTCG CAGTGTAAAG 
    CAACAAATGG AGAGTTTGCT ACTAGCCTAC TACACGTGTC TTTGGTGTTA 
    CCTACAACTC AACACATGTA CTGCTTAATG GTATTGTTAA AGAAACATAA 
    ATGTAGCTGT CAAAAAATAC ATAGTGGCGT TAGCGACAGA AGAAAAGACA 
    CTATTGAGTA CTGAGGTGAG GAAGAGCTTT TTTTTCCATT AATTAGACTC 
    TTATTAAAAT AGGTTAATTA TATTGGTGAC ACTAATTTTA CCCATGCATG 
    AAAAAGTCAA AGTCTACATG CACAATGACT CTGTTTAATA CCACTATATT 
    AAAACTAATA CAATCAAAGT AGTATTTCGT TTTCCCAAAG TTGATAATGT 
    CGATGTGATA TTTATTTGAT GTCGATTACC TAGAAGAGTC TTTCCATTTT 
    CATCTATCAA GCATTATAAT GAACGTCTAA GTTCAAATCA ATTGTTGATG 
    AGTAAATAGA CTCATGTTTA TATATTAGTG TATATTGATC TTTCCTCATT 
    GNCTATGAAA TTCTTGGTAT GCTTCCTCTC GAGATGCTAA TACATATATG 
    TGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 540864 [Map]; Strand: w
      • AT2G02130.1 - [+] show detail - low-molecular-weight cysteine-rich 68
        Distance: 230; Region: intergenic
      • AT2G02135.1 - [+] show detail
        Distance: -1033; Region: intergenic
    Flanking Genome Sequence: 54-0677-1 - 3-prime edge 
    CTGATTTTGA ATGGTAATCA CTTAATATTC CAAAATAGTG TATATAGGTT 
    TGATATTTAC TAATCATAAA AGTTTTATCA AAAACGTTAC AAAAAATTTT 
    AGTCTCAATT TTTTTGTACA ACTACTTCTA ACAGTTTTGT ATCATGATAA 
    AACTAACAAC TACAGCTAAC AATTAAAAAA TTTGTACGAC TTTTTGTTAC 
    CAATCTAATT TCTAACCAGA TTAACTCTAT ATAATCGATC GGTTCTCTCA 
    ATTCTATTCG AGCATTATTG TGATTTACTT TGCAGACTCC GGTTATTAAA 
    AACTTTTAGA TTGAGATCCA TAATACAATA TATTAAAAGC CATTAATTGA 
    TTTAACATTA CATTAAAACC GGAAACACAC AAACCAACGA CTTATTTGAG 
    AAAACACTCA TGTACGGTAC GACATGGTAC CGTACGGAAG ATTTAGATAA 
    GAAAGAAGTA ACACACTGAC GATGGATCGA AGATTTGAGT CATGAGAATG 
    GATGGATCAG CAGTGTCTTG TGCAGTAGCA ACGACGACGG AATCCACGGC 
    ATTTTACCTC CGCCGAAGCC CTTCGTTGTG GCACACGNTT GCACAGNTGN 
    GTGNGCTCAC ACNNTGGACC CTTGAACCTA TGGNTCTTTG CTNANACGTG 
    CGTNNCCTNC NCGGGGGCCT GGACCCCTNC CTTNNAGAAN TTTNNNCCCC 
    NCCCCCNCNN AAANGGNNNN NGAANNANAG CGTNNG

AT2G02130.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 68
Curator Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational Description
low-molecular-weight cysteine-rich 68 (LCR68); FUNCTIONS IN: peptidase inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 69 (TAIR:AT2G02100.1); Has 401 Blast hits to 401 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 401; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02135.1

Model type
Pseudogene
Curator Summary
Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.
Link
InterPro Scan - TAIR