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54-0685-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27034768 [Map]; Strand: c
      • AT1G71870.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-0685-1 - 3-prime edge 
    CTCGAGGCTA CCGAGACGGC CGAGGAAGAG AACAGACACG ACGGCGCGCA 
    CGTAGACAAG ACAGTTCATT GCTGTGATTG GTAAAACCAT AGCCCAGAGC 
    TCTTTTAGCT CTTCAATGAC TTGAGGAAGA GTTGGGTTTT TATGGGAAGT 
    GAAATCATCT GACTGGATTT TGTCTTCCAT TGAAAATGGT GGATTTTTAG 
    TTTACTGAGT TTTCTNTGCT NCTCCACTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27034652 [Map]; Strand: c
      • AT1G71870.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-0685-1 - 5-prime edge 
    GCCTCGAGTT AGNCGGAGGA TCTCTCTCCA TNNGATTCAC CTNCNTCANA 
    GGATANTCNG TTAAGNTTNG ACTCGCNTCG GGTCTCNAGC CATTGTGTAG 
    NCGANCCTAC GGTAGCAAAA ACTGGGATCT CCTCACGCTC TCTCTTCACC 
    GTATGGTCGT GATTCTCTTA ATGGCCTCTC TGCCCATAAG CCTCCTTTGG 
    ATCAACCTTG GACCCATCAT GCTTTTCATG GGTCAAAACC CGGAGATAAC 
    CGCTACAGCG GCTGAATATT GTCTCTACGC GCTTCCTGAT CTTTTGACCA 
    ATACTCTCCT TCAGCCGTTA CGTGTTTATC TAAGGTCGCA GCGAGTGACG 
    AAACCGATGA TGTGGTGTAC GCTAGCAGCA GTGGCGTTCC ATGTGCCATT 
    GAATTATTGG CTTGTGATGG TGAANCA

AT1G71870.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G29140.1); Has 10234 Blast hits to 10086 proteins in 1918 species: Archae - 185; Bacteria - 7350; Metazoa - 148; Fungi - 328; Plants - 1302; Viruses - 0; Other Eukaryotes - 921 (source: NCBI BLink).
Link
InterPro Scan - TAIR