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54-0709-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 604766 [Map]; Strand: w
      • AT5G02670.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: poly(A) polymerase 3 (TAIR:AT3G06...
        Distance: -160; Region: promoter
      • AT5G02680.1 - [+] show detail - LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED...
        Distance: -152; Region: promoter
    Flanking Genome Sequence: 54-0709-1 - 3-prime edge 
    CTCCTAGCCA CAGACTCTGA CTCAACGTCA AGAACAGCAA TCTCACTGTG 
    CTTTTTCTTC TCATTACTCG AAGTCAAAAG TCAAAACTGG TCTCTCTTTC 
    TTCTTCAGAC AATAATATCA CGGACATTAA AAAGAAAAAG AATCTCACTG 
    AATTATTGTC TTTTACTGGG GATTACACCT CACTGAATCT CAACAATGGA 
    AGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 604820 [Map]; Strand: w
      • AT5G02670.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: poly(A) polymerase 3 (TAIR:AT3G06...
        Distance: -214; Region: promoter
      • AT5G02680.1 - [+] show detail - LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED...
        Distance: -98; Region: promoter
    Flanking Genome Sequence: 54-0709-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAG CAGCTTCTTT TGTTTTTTGA ATCGACAATG 
    GTTGAGGAAT AAACGAAATC CTGACCGTTG GATTTTTTCT TTTCTTTTCT 
    TCTACTTAAT AATGTCCGTG ATATTATTAT TGTCTAAAGG GGAGACCCNG 
    AGAAAGAGCG AGACCAGTTT TGACTTTTTG GACATTGTGT GTTTTCGATT 
    CGATCTCTGA ACTGAAGGTA TGCTTTTGAA TT

AT5G02670.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: poly(A) polymerase 3 (TAIR:AT3G06560.1); Has 14 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02680.1

Model type
Protein coding
Computational Description
LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 252 Blast hits to 252 proteins in 89 species: Archae - 0; Bacteria - 71; Metazoa - 93; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR