1. Home
  2. Mutant Lines
  3. 54-0713-1

54-0713-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107451 [Map]; Strand: c
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-0713-1 - 5-prime edge 
    ATGAAGGACA TGTGGCTAAA CTCTGCCTCG TGATCTTCCC TCTGCTTGCC 
    GCTTGTCTTG TGGGGATATC TCGTGTGGAT GACTACTGGC ACCACTGGCA 
    AGATGTCTTC GCAGGAGCTC TCATTGGCAC CCTTGTAGCC GCCTTCTGCT 
    ACCGTCAGTT CTACCCCAAC CCTTACCACG AAGAAGGATG GGGTCCCTAC 
    GCCTATTTCA AGGCAGCTCA AGAACGAGGA GTCCCTGTGA CCTCCTCCCA 
    AAACGGAGAT GCCTTGAGGG CTATGTCTCT GCAGATGGAT TCAACATCTC 
    TCGAAAACAT GGAATCTGGC ACTTCCACCG CTCCCAGATG ATCCTCCTCT 
    CTTATTATTT GATTCATTAT TTGGTTTTTC ATTTTGATTT GGCCGTCGTC 
    GTGAGATTGT GAATGGTGTA GCTACATACT GTATGTGTAT TCAAAACTCT 
    ACTTGTACCA TTACTTTTTT GTAAATCCAC TCTTCATGAA ATTGACGTTT 
    TTCTGGTGTC CGAGANGCTT GGGTCGCTCG AATAATCTCG TCCATANACT 
    AATACGGCTC TAGTGAACAC NGTATTTACA TGTTTGTGAT CTAACTGAAA 
    TCANTTATTT CTTTATTCGN AATCATTCTT GGGTAACATT TTCTCTTATA 
    ATCTGATGGT TGAANATGGC AAANCCATTG NTAGCATANC CATANCTGGN 
    TCAATCATCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107567 [Map]; Strand: c
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-0713-1 - 3-prime edge 
    TCCTTCATTG TTGAAGGCCT TGATTTTGCC AGAGAGGTAA AGGGAAAGGA 
    ATGTAAGCCC CGCAAAGGAC CAGGAAGTGT GTCCGCTCGG GAAGCTCTTG 
    TGGCCTTCCT TGACCTCAGC TGCCTTGCCG TGGCATACCA CACCTCCCAA 
    CGCATCATAC AGCTCTTTGC CGTCGGGGAA GCAGCGCCAG TAGAAGTTAG 
    GACGAGGGCG TCCGGTGGCT ACCTTGATGG AGTCAGTGAT GACACCAGTT 
    ATCAAGACGG CGAAGAGCAG CCCGAGGATG CTGTGGTGCA GATCGTACAC 
    ACATGTCCTC TTCAGGTAGA AGCAGACGAA CACTATGATG GGAAGAAGCA 
    CAGCGTACAC AGGGACAGAC CAGATAGGTA CGGTGTTGTC CTTGAAAGGG 
    TACTTGAGGT CAGTCATCAT GTCTTTTCCC ACGTAGCGGT AGAAAGGAGA 
    GATGAGGTTC AAGCCTATCT CGATGGCAAT CAAGATGACN AGTATGATCC 
    AATCGTGCTT GTGTTTANAA NCGACTCTTC CTCCATGGGA CTTTATANTG 
    TGAACACTAA NATNACCANC CCNGGCCNTN NACCACNCNT GCNCTTANA

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR