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54-0731-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28471422 [Map]; Strand: c
      • AT1G75830.1 - [+] show detail - low-molecular-weight cysteine-rich 67
        Distance: -935; Region: promoter
    Flanking Genome Sequence: 54-0731-1 - 5-prime edge 
    CCTTCAAGCC CTTCTAAGAC AGCACCAGCA CTAGCCGTGC ATGGACAAGA 
    CAAGTAACAA ACTCAGAATA GTACACCACC CAAGTTAATT TGTTAGGTTA 
    TTATTAAGAA TAGAAAGAGA AGTTAACATT GTTAGATATG AATTATATTT 
    GGTTAGATTA AGAATGCTTA ACTTAGGGAA GGCTGCTTCT CTGTTTAATG 
    TAACTTAACT ATTTAAGTGG CTGCTTTGGC TTTTGAGTCA AGTGTTACAT 
    TGCCTATAAG AAGTGGGCTT ATTTTGAATA CACACACAAT TAAGGGATCA 
    ATTATGGGAT TAGCATATTA AAGTCTNTGC TTCTC

AT1G75830.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 67
Curator Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational Description
low-molecular-weight cysteine-rich 67 (LCR67); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system, cell wall; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: plant defensin 1.3 (TAIR:AT2G26010.1); Has 172 Blast hits to 172 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR