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54-0797-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3232121 [Map]; Strand: w
      • AT5G10278.2 - [+] show detail - other RNA
        Distance: 0; Region: intron4 (NonCoding)
      • AT5G10278.1 - [+] show detail - other RNA
        Distance: 0; Region: intron5 (NonCoding)
      • AT5G10280.1 - [+] show detail - myb domain protein 92
        Distance: -448; Region: promoter
    Flanking Genome Sequence: 54-0797-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA TCATCACCTA CTCGGAGAAG ATCTTTTATG 
    GATTTCATAA GAAAGATGAT CTAACCTTCT TGCTTTTAGT TGATCTGTGT 
    TTTTTTATGA GCTGAACCAT TCAATAACCT AGACTAGAGT TTTGGATTGT 
    GAAGAGACCA AGCAATAACT ATGTGTTGTT GTTATTCTTC TTGACAAATG 
    CAGGGGTTTG GTACTAGGGC ATAGTGATGG CAACTAATGA ACTGCTTCCC 
    AATTAAAGAC AAAAAACAAA TCGATTGTTA TGTGTTTGTC CGTTGGAGAC 
    GGCTGTTCCC GAGATGATAC TGATGTTGCT TTAAGACAAG AGGAAGAATT 
    TACATTGAAT GATTTTTATC ACACTGGTAA AGGAATGCGT ATGTGAGAGT 
    ATAAAAGAAA ATGATTAGAA AAATGGAATT GAAAGGTGAA AGTGACATGG 
    TTGTTTTGGT AGGCGAATAG GAAAGAAGCA CGTGGTGTAT GGACATGAAG 
    AGAAAAGGAT GCTAGGTTTA ATATAAATTG GAATAAGAAG CAGTTAGTGG 
    TTGTGGAGGA AGGAAGGAGG CAAGCAACCA AATCTCAGAG ACAATTATAA 
    CAGTNTAGAG AAGGAAGAAA GAAAAGAAAA GAANCCGTTG TTGATTTAGA 
    TACAGAGAAG AGAAGATCAT CTACATGGGA AGATCTCCTA TCTCTGATGA 
    CTCTGGTCTC AAAAANGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3232111 [Map]; Strand: w
      • AT5G10278.2 - [+] show detail - other RNA
        Distance: 0; Region: intron4 (NonCoding)
      • AT5G10278.1 - [+] show detail - other RNA
        Distance: 0; Region: intron5 (NonCoding)
      • AT5G10280.1 - [+] show detail - myb domain protein 92
        Distance: -458; Region: promoter
    Flanking Genome Sequence: 54-0797-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCAGAGG 
    AGAAGGGCAA TAAAGGATAT TTGACAGGAG GGCTAAACTT TTAGGTTGTA 
    TTTTTTAATC ATTGGAATGA CAAATAAAAT GAGAAAGAAT TTGTGAAATA 
    TAGAAGTCAG CGCCAACAAC ACATGGCAAC AAGAGGGTGG CCAAAGAAGA 
    GACATCTCCT CTGGCACGCA AAATTAGGTT TTCCTCGCAT CATCCATTTC 
    CATGGCCTAT TAGTTTATGC ATTTAATATT TCATATTAGC TATATTTTTA 
    TTGTATTTTT CTACATACCG ATTAAAGCTA TGATCAACCA ACTAAACAAA 
    ACGGAAGGCA ATGAACCCTA AGAGCTTGCC GCTGAAAATG AGAATCTTTC 
    AAAAAAGTCC TGAGAGATTA TTAAAGCAAG TAAAAGATGT AAAGTGGTCC 
    AATAGTGTAA AAGAAAAAGA TGCAGAGTGG GTTTGTTATG ACCGTGTAAA 
    TTTCTTGTTT GACACATCAT GATTAAGTCC ATATATAGCA AATTTTAAGG 
    TATTACTTAC AGAGATTGCC AATCCCTAAA ATGCATTTTT CTAGGAAGAA 
    AAGATACCAA ATGAAGAAAC CGACAGGAAA AGCATACACT ATATCGTTAG 
    AAGAAAACTT GTAAGATTAT GTTTTGTATC ATTTTGTGGC AATACATAAG 
    AAAACTTGTA AGCT

AT5G10278.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT5G10278.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT5G10280.1

Model type
Protein coding
Short Description
myb domain protein 92
Curator Summary
Encodes a putative transcription factor (MYB92).
Computational Description
myb domain protein 92 (MYB92); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 53 (TAIR:AT5G65230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR