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54-0809-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26503990 [Map]; Strand: w
      • AT5G66340.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 837; Region: intergenic
      • AT5G66350.1 - [+] show detail - Lateral root primordium (LRP) protein-related
        Distance: 477; Region: intergenic
    Flanking Genome Sequence: 54-0809-1 - 5-prime edge 
    CCGTAACGTA CGATGTGAAA ACTATGTAAG ATAGAAATAT GGAGAAACTG 
    GCTATCAGGA TATATATATA TATATATAAA ATANTGTAAA GAGTCGGNTG 
    NGGCAGTNAG TCTCTCTTCA ANTGTNAGTG NACTGACNTT ATATCANTCA 
    NNGGAGNGAG AGCATCNCTT TAAAAANGGC NCACACTGAA TAAAACTTAA 
    GATTNGGGTN NGGCATATNG CCGGATATAT AGNAGTCGTA NACGAACGAT 
    ATACCTGNGC NAGTGTGTCT GATTTGNTGA CCAAAAGCAC AANACACCTA 
    AANACATGTN NTCACCCAAA TTNCAATTGT GTNNCCGCGT TTNNCACATT 
    NATATTTCCA CGNGCAANNC ATAAGTGCAN TTACGGGGNC CTAAANTANT 
    NCTNNGAANG GTNATTAGTG TTAAAGTANN CCGNAAAAAA GAGTTNTGGG 
    AANCGCTGAC AATNANNCGG GGNTGANNNN NACNATCCNN GGGGAAGCNG 
    NCNCNNCAAA NNGNGNTTTT GGNGNGANCN NNNNNAGCNC NGGGGNGGNN 
    NNTTTTNNAA NNGGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26503874 [Map]; Strand: w
      • AT5G66340.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 721; Region: intergenic
      • AT5G66350.1 - [+] show detail - Lateral root primordium (LRP) protein-related
        Distance: 593; Region: intergenic
    Flanking Genome Sequence: 54-0809-1 - 3-prime edge 
    CGTTACGGTG TATTTTTTAG CCACATCTGA AGGGGCTTTA CTATACAAAT 
    CTCAAATGCA ATCCCCAAAA TCTGACAAGC AGTGAGACTG TATGTGTATT 
    TTGATTCTTT TGTTACAACG AGTGAGGCTT GTAAATTCGG CAGATTATGA 
    GTGAGTGGGG GAACAGAAAA AGGTGTAAAA TTGGTATGCA TCTTTATTTC 
    TGCAGGTGTT TATGTTTGGA CCTAAAAAAA CTCTTCTTTC CCAATTCATT 
    TCTTAGGCTC TCTTTTTCAT TATTCAATTT ACGTCACCTC AAGAAAGCCA 
    TGATGATAAC GAGATGCAAA AAGAATCGGA AAACGAGCTA ACATTATAAT 
    AACTCATTAG GATTAAAATT TAATTAAGTG TTGCATGGAG TTGTGAAGAC 
    TTGTAAAAAA GATGCACACA AATCATGCAT TTTGTGATTT ACATTTATAT 
    CATTCTATAA TTGAATTGGT CCCATTAAAC CTTAAACAGC TAATCCCACC 
    TTGCTTATGC TGATTTGTCC CCGATTATTT CCTCCGTACT ACTCGCACCA 
    TGTCTTCGAA ATTTCTCTTT TGGAAAACCT AAGTTGCTTT TTATTTTCTT 
    GGTCAAGCAA GACTCAAGAG TTTGATGTTG TTGCACGTAG AAAGGATCTT 
    GAAGACGGAT GTCGGATGGT GATAAAAGCA GCAACTTTAA ACTCCGAACG 
    CAAGTGGGGC CTTANGAA

AT5G66340.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66350.1

Model type
Protein coding
Short Description
Lateral root primordium (LRP) protein-related
Curator Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.
Computational Description
SHORT INTERNODES (SHI); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR