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54-0838-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15935049 [Map]; Strand: w
      • AT4G33020.1 - [+] show detail - ZIP metal ion transporter family
        Distance: -782; Region: promoter
      • AT4G33030.1 - [+] show detail - sulfoquinovosyldiacylglycerol 1
        Distance: -367; Region: promoter
    Flanking Genome Sequence: 54-0838-2 - 5-prime edge 
    CNTGATAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATAT GTTTTGCGTC TTAATAAAAT TTCATTCAAA 
    AGATTATGTA AGTTAGGTTT GCATTTTACA GTTGATTTTG TTTTTCTCCT 
    ATCTCATGAT TCTCTGTTTT AATAATTAAA AGTTAAAATT TAGAAAATAG 
    CCACAAACAT ATTCAAAAAG TATATATTTG GGCCAACCGG CCCAGTAAGG 
    GAAGAATGTT CCTTAAGTTG CCTAAATGAG CGACTGAGAA ACTGGCCCAC 
    AAAGGCCGGA CCTGTATCAT TCACAACCGG AAAACTTTAA AACTAATAAA 
    CCAACGTTCT TAAAAAAGCG ACACTTTGGG CCATAATTTG TTGGGAAGGG 
    AATAAGTAAG AATATGCTTT GGGCATATCT GATGATTTAT ATCTGTCTCA 
    TCTCATCTCT CATCGTTCCG GGAGAAGAGA AGAGAGACCC ATCCCTCACT 
    TCAAAGTTCA AAGTCTCGAA GGATCTTCTC CAACTCTCTC TAAACAAGAT 
    TCCAAATTTT CAAAGGTAAG CAATCGTTTC TTCTAATGAA TTTCATTTCT 
    CCGGTTTTGT AAGTTGAGTG ATTTCGTTTT GAAGAAACTC TGAATATGAT 
    AGGAAATCAA AATTCACAGA GTTTTCATTC AGTTGGGTTT TCTCTGAATT 
    TCATCAATGT ACTTCTTTCT TACATTTACT TTAGTTGATC AAATAAATAT 
    CCAGTCTTTG ACAATAGCTG ATTTTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11322751 [Map]; Strand: c
      • AT4G21240.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-0838-2 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGGTTGTGAG ATAAAATCCC CTAAACATGA TTATTACAAT CCGAGTTCCG 
    AATCTGTCAA CGGTTTGGTG TGTTTCGGAG ACTTTTACAA TATCGTAGTT 
    TGGAATCCTT CAATGAGACA ACATGTTACA TTACCCGAAC CTAAACCACA 
    CAGTACTGTC AGGTACTTTA TACGTAGCTG TTTAGGATAC GATCCGGTCG 
    AGGATAAGTA TAAAGTATTG TCCATCTCAG GCTACCACAA TGGCAACCAC 
    GATCCTCTCG TTTTTACATT GGGACCTCAA GAATCATGGA GAGTGATCCA 
    AAATAGCCCT TTAGATATCC CTCTACCAAC CGGAGGATCA CGAGTAGGTA 
    CATGCATCAA CGGGCACGTG TACTATGAAG CGCAGATACG TTTTAAAGTA 
    GATGATATTT TTAATTTTGA AAATATCCTT ATGAGCTTCG ATGTGAGGTA 
    CGAAAAGTTC AACACAATAA AAAAACCAGC TGATCCTACA CTTCGAAACT 
    TCATGCTCAA CTACCAAGGA AAATTAGCAT GGTTTTGCTC CGATTATTCT 
    TCTATAAGGT TTTGGGTTTT AGATGATGGA GACAAACAAG AATGGTCGCT 
    CAAAAACTTT ATTTTGCCTT TTCCAATCTC TCCTGAAATT GACCCCATCT 
    TTGAATGTAG AGTGATGCTG ACTGGTGTTA CTCATGATAC TGGTGAGTTC 
    ATTTTTATTA ATGCGATAAT

AT4G21240.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G47790.1); Has 1718 Blast hits to 1677 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1718; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33020.1

Model type
Protein coding
Short Description
ZIP metal ion transporter family
Curator Summary
member of Fe(II) transporter isolog family
Computational Description
ZIP9; FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, cation transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron regulated transporter 3 (TAIR:AT1G60960.1); Has 1755 Blast hits to 1721 proteins in 263 species: Archae - 0; Bacteria - 88; Metazoa - 470; Fungi - 500; Plants - 517; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33030.1

Model type
Protein coding
Short Description
sulfoquinovosyldiacylglycerol 1
Curator Summary
involved in sulfolipid biosynthesis
Computational Description
sulfoquinovosyldiacylglycerol 1 (SQD1); FUNCTIONS IN: UDPsulfoquinovose synthase activity, sulfotransferase activity, zinc ion binding; INVOLVED IN: cellular response to phosphate starvation, sulfolipid biosynthetic process, glycolipid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); Has 10748 Blast hits to 10748 proteins in 2398 species: Archae - 273; Bacteria - 7931; Metazoa - 289; Fungi - 89; Plants - 466; Viruses - 5; Other Eukaryotes - 1695 (source: NCBI BLink).
Link
InterPro Scan - TAIR