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54-0843-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11732297 [Map]; Strand: c
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -10733; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -6980; Region: intergenic
    Flanking Genome Sequence: 54-0843-3 - 5-prime edge 
    NNCCCAAGCT TTTAAGATCA GGTTGCGCTT TAAGTTGNTA TACTCAATCA 
    TACACATGAC ATNAAGTCAT ATTCTGACCT ACAAAACACT AACCAACCTT 
    CTTCTAGCTT CTCAAAGCT

AT5G31804.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.3e-259 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31821.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-86 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR