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54-0876-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 227774 [Map]; Strand: w
      • AT4G00500.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -378; Region: promoter
      • AT4G00500.2 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -579; Region: promoter
      • AT4G00520.2 - [+] show detail - Acyl-CoA thioesterase family protein
        Distance: 0; Region: intron1 (CDS)
      • AT4G00520.3 - [+] show detail - Acyl-CoA thioesterase family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-0876-1 - 5-prime edge 
    GTTTCGACAG TCTCTACACC GTCATGAACA CTGAATCAGG TAATTCCGAT 
    ATCTTTTTTC TTTGTTCTAT CGCCGGAGAA ATGAAAGAGA TGTTGAACTG 
    AGAGTTTTTC CAAGATTCGG ATGATTTTTC ATATGATTGG TTGCTTTGGT 
    TTTGTAGTTG TGGAGTTCCT TGGGAATGTG ACCTTGTTGC AGCGATTACC 
    TAGTTCTTCT TTGAAGAGAA TAGCTGAAGT TGTTCTCTTC AAACGTTATG 
    GTCTGTGATT CTNNGCTACT CCAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 51699 [Map]; Strand: w
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -3349; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 7006; Region: intergenic
    2. Chromosome: 2; Position: 54680 [Map]; Strand: w
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -6330; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 4025; Region: intergenic
    Flanking Genome Sequence: 54-0876-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTGACGAAG 
    CCACAGAAAA AAGCGGATCA CGATTTGAGG TTATGGTTTG AGAGTTATGA 
    TCGTTTTTCC AAGACAATTC AGACTGACAC CACTTGCAAA CGACCAACTT 
    CGTGAGCAAT TTTCCGACAT TGTACGACCC GCGAACCAAG AGACAGGAAA 
    CATATCCACA GATTGCCCAG ACAGACAGCT CTCCATATAG TCCATATTGT 
    TCCAATCGAA GCTATGTGCC GAAAGTTACA TGCGCTTCTC TCCAGCAGAT 
    ACAGCAAGAC GAAACACTGG TCAAAAGTTA CAAAACCAGT CGA

AT2G01034.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT2G01037.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 5.0e-229 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT4G00500.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 561 Blast hits to 561 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 171; Fungi - 76; Plants - 213; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00500.2

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00520.2

Model type
Protein coding
Short Description
Acyl-CoA thioesterase family protein
Computational Description
Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 3429 Blast hits to 3402 proteins in 976 species: Archae - 0; Bacteria - 1910; Metazoa - 393; Fungi - 300; Plants - 65; Viruses - 0; Other Eukaryotes - 761 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00520.3

Model type
Protein coding
Short Description
Acyl-CoA thioesterase family protein
Computational Description
Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR