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54-0905-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17512236 [Map]; Strand: c
      • AT4G37200.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: -872; Region: promoter
      • AT4G37210.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -23; Region: promoter
      • AT4G37210.2 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -35; Region: promoter
    Flanking Genome Sequence: 54-0905-1 - 5-prime edge 
    AGTGGAATCG TATTAAAACC CTCTCTTCGC TTTTTTTTGG CGGACTTGAA 
    AATGAAAACC AAAATTAAAG AATTAGGGGA AAAAATATTT TTATGTTTTA 
    ATTAAAATAT TCACGGTAAA CACNTAAAAT ATACNGAATA AAAAATGCNG 
    TATGTTATCC CACTAACGGT TAGTCTAGCT AAACTGCTCC GCTTTTGTTC 
    AATCTATTTG ACTCATGACG CACATAGGCC ATAGGAAAAT TGTTACGCTG 
    TAAAAAAATA TATGACCGTT GTAACGGAAA AGGGTAATTT TGTCTTACCG 
    AAGTTGTCTT ACCGAAAAGG GAAAATTGTT AGCTAAAAGT TTTTTTATTA 
    TATAAAATAT TTTTATTACA AAAATGTTAA ATTTAAATAC TGGAACGGTT 
    AGACTTAGCA TCCCGTCTTT TANATATGTA ACTCTTGCGT TATCATAAGT 
    TCAACATGTT TTCTCATACT TAAATTTAAT TTTAAGATTT TTTCAAAAAT 
    TATCTGTTTT GATATTTTAA AACTAAAAGT TTATTAACAA AATGTTTTCA 
    AACTTAAATG TTGAAATTTA AATATTTGAA AGCGTTTAGC ATCCTGTTCT 
    TTTAGTCTGT AAATCCTGCG TATTATAAGT TCAACATATT TTCACATATT 
    TAAATTTAAT TTCTAGGCTT TTTCAAAAAT AATATTGTAA GTAATCCGGT 
    GATTTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17512300 [Map]; Strand: c
      • AT4G37200.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: -936; Region: promoter
      • AT4G37210.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G37210.2 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-0905-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCGC 
    GAATTCCACT CTTCTCAACA AATTTGACGT TTTTGTTCTT CGAAATTCAA 
    ATTCACCCAG AAAAAATCTC AATCCGCGAT GGTTGAAGAA TCACCTTCTG 
    CGTCGGAAGC TTCGGTGATA CAAACCCTAA CCGAGCCGGC GACGGAGATT 
    GCGCAAACCC TAGAACCTAA CCTAGCCTCA ATCGAAGCCA CCGTCGAATC 
    GGTTGTTCAG GGAGGCACTG AATCGACTTG TAACAACGAT TCTAATAACA 
    ACAACGCCGC TGATAGTGCT GCTACTGAGG TTTGTGATGA GGAGCGTGAG 
    AAGACGCCTT GAGTTCGCTG AGGAATTGAC GGAGAAAGGC TCTGTGTTTT 
    TGAAAGAGAA CGATTTCGCT GAAGCCGACG ATTGCTTCAG CCGTGCTCTC 
    GAAATCAGGT ATCATTTTGG GAGATTCATT TGAGAATTTG TTGTNGAGAA 
    CCTCTCAATC ANGGGTTTAG GGTGNAAGAT GNNNCTGAAT CTAGTGGATG 
    CTCGAACGAT CTAATCNTGG NGATGGATTT NTANTNGAGT TTNAGTNGNN 
    NGNNNTNTNG ATGAANNNTT TNCNNTGNNG NNCTTTTTNN NGGGGNGGNN 
    TNAAAACATN GNTTNNNTTN NTGGNNNNNN NNNGNNNNNN CATNANNNTG 
    NNCT

AT4G37200.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Curator Summary
Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex. Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin like domain, extending into the thylakoid lumen.
Computational Description
HIGH CHLOROPHYLL FLUORESCENCE 164 (HCF164); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin X (TAIR:AT1G50320.1); Has 12708 Blast hits to 12383 proteins in 2440 species: Archae - 136; Bacteria - 7708; Metazoa - 1002; Fungi - 428; Plants - 950; Viruses - 3; Other Eukaryotes - 2481 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37210.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37210.2

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR