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54-0912-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29575560 [Map]; Strand: c
      • AT1G78620.1 - [+] show detail - Protein of unknown function DUF92, transmembrane
        Distance: 0; Region: exon1 (CDS)
      • AT1G78620.2 - [+] show detail - Protein of unknown function DUF92, transmembrane
        Distance: 0; Region: exon1 (CDS)
      • AT1G78630.1 - [+] show detail - Ribosomal protein L13 family protein
        Distance: -396; Region: promoter
    Flanking Genome Sequence: 54-0912-1 - 5-prime edge 
    ATCTGGAACC ACTTTCCAAC GGAATGCTTT CGTCGGGAAG TANAGCCGAC 
    GGTGCTACGG CGGCGGCTGC ATCGATGGAA GGAGTGATGA CGGAGGCGAT 
    GAAACTGATT CAATCGGCGT CACCAACTTG GAAATCAGCT GTGGCTAACA 
    ATTTATTGAT TTTTGTTCTC GGTTCACCGC TTCTTGTTAC CGGATTGTCC 
    GCTTCTGGGA TCGCCGCCGC GTTTTTGCTT GGTACTTTAA CTTGGAGAGC 
    TTATGGCTCT GCTGGTTTCC TCTTAGTCGC TGCTTACTTC GTCATAGTAA 
    GTGCATTTGT GATCAACCTG AATGTAATTC GGTAACTGAC TCTT

AT1G78620.1

Model type
Protein coding
Short Description
Protein of unknown function DUF92, transmembrane
Computational Description
Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 865 Blast hits to 865 proteins in 301 species: Archae - 133; Bacteria - 238; Metazoa - 78; Fungi - 68; Plants - 85; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78620.2

Model type
Protein coding
Short Description
Protein of unknown function DUF92, transmembrane
Computational Description
Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78630.1

Model type
Protein coding
Short Description
Ribosomal protein L13 family protein
Computational Description
embryo defective 1473 (emb1473); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: thylakoid, ribosome, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT3G01790.2); Has 8725 Blast hits to 8725 proteins in 2839 species: Archae - 248; Bacteria - 5258; Metazoa - 358; Fungi - 293; Plants - 251; Viruses - 0; Other Eukaryotes - 2317 (source: NCBI BLink).
Link
InterPro Scan - TAIR