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54-0953-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22802491 [Map]; Strand: c
      • AT5G56310.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-0953-1 - 3-prime edge 
    ATAACCGGTT TAAACAGAGA CAACCTCAAC GTTGCCAAAT TCATCGAAGC 
    ATGTTCAAAT GCAGGACATC TCCGATATGC TTACTCTGTA TTCACCCACC 
    AGCCATGTCC CAATACTTAT CTCCACAACA CCATGATTAG AGCTTTGTCT 
    CTCCTCGACG AACCCAATGC GCATTCGATT GCGATCNCGG TTTATAGAAA 
    GTTCTGGGCT TTGTGTGCTA AGCCTGACAC GTTTACTTTC CCGTTTGTGT 
    TGAAGATTGC TGTTAGGGTT TCTGATGTTT GGTTTGGGAG ACAGATTCAT 
    GGACAAGTTG TGGTTTTTGG GTTTGATTCG AGCGTTCATG TTGTAACANG 
    TTTGATTCAN ATGTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12014466 [Map]; Strand: c
      • AT1G33120.1 - [+] show detail - Ribosomal protein L6 family
        Distance: 1942; Region: intergenic
      • AT1G33130.1 - [+] show detail - transposable element gene
        Distance: 2185; Region: intergenic
    Flanking Genome Sequence: 54-0953-1 - 5-prime edge 
    GGGNAAAACT AACGCTTTAT TCTCATGTTG CGGTTTTAAA GCTTCAATTT 
    TGGTGAGTTT TGCTTGATTG AATTAATTTT TTCGTTTTAT ATAGAGAATC 
    TACGAAGATC

AT1G33120.1

Model type
Protein coding
Short Description
Ribosomal protein L6 family
Computational Description
Ribosomal protein L6 family; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: fruit, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site-2 (InterPro:IPR002359); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family (TAIR:AT1G33140.1); Has 1644 Blast hits to 1643 proteins in 495 species: Archae - 312; Bacteria - 169; Metazoa - 422; Fungi - 179; Plants - 339; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G33130.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 1.3e-125 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G56310.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR