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54-0978-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 4837 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron18 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron17 (CDS)
    Flanking Genome Sequence: 54-0978-1 - 5-prime edge 
    GAGATGACAG GGTATAGATT AGCAAAGTGC GGTAAAGAGT GTTTCATAAA 
    AAGCTTGGAC TACTGAGATT AACCTTGAAA GAGGAATTTC ACCAAGATTT 
    GACAAAGAGA TTGGTTTACG AGGGTTGAAA AAGGGCCTGA AAACATCATC 
    AGGGAAATTG AACAAATTAA TGAGATAGAT TCCAGTGTGT CTACTAAAGA 
    AAACCACTTA CTGAAAATTT TCAGAATCTT TTGGAGACAA AGGCTGCCAT 
    CTTGAGCTTG ACCCTCTCGC ATGTAAGTAA AGTATTTCTG AATCTGAGTT 
    TATTGGTACT AGCCCTTTCA TCATGTATAT TTTCCCCTCT GTCAGCTCGG 
    TTCTCTGTCA CAGTAGTAGA CAATGATAAC TGTTTTAAGA ATCTACAAGA 
    AAAAAGTTGA ACAAGCTAAT CGATGATGCT CTTAATGCAA CAGTACAGTG 
    ATGGTAACGA TTCTTTGATA TGCATTTCAN TCCATTCNAG GTCCACANCA 
    CTCTNAAAAG CTTATNTTTG GAACTCCCCG TTNCATATNA NCTCATATGG 
    ATAAGGNCCN NTNNNCTTNT TNNCCNTTNA AAAATGCCTT GTTTNAANNG 
    NNCTNAAACN TTCNNATTTN NGCNTTNNAT GNNCNNNNTN TNNNGGGATC 
    CNNNNNGNNC NNNCNNNNNN NGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 4721 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon19 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon18 (CDS)
    Flanking Genome Sequence: 54-0978-1 - 3-prime edge 
    GTCATCTCTA ATTATGTCCT TCAGTGAATT TGATATCGCT GCGTACGTTG 
    TATATGTTGG AAATGCATAC ACGGATGTTC TACAAAAGAA GCAGTGGGTG 
    TTTGTGACAG ATGGATCCGC ACAACATTCA GGGGAAATCT CAAACAGTCT 
    TCTTGCTATA AGCTTCAGCA CCTCATTCAT GGATGATAGC TCTGTTTCCC 
    ACATCAGCCA TAATTTGGTT GGATCCGTGG TATGTACAAA TTCTAATCTT 
    TGTCTAGTTT TACACAGAGA GAATATGCAC CAAGAGATTA AATTTTGAAA 
    AATATATGCT TGTTATGGGT CTTAATTTTT GGCAGGTCGG ATTTTGCAAT 
    CTAATTAAAA GAGCAAAGGA TGTGACAAAC GAAATTTGGG TTGCTGAGGC 
    AGTAGAGAAC TCAGTCTACT TCATAAACGC AGAAGCTGCC TACTCTTCTC 
    ACCTCAAAAC CAGCAGTGCC CATATCCAAA CATGGGCTAA GCTCTCTTCT 
    TCCAAATCCG TTCGTTCTCG TCGAGAANAG ATGGGAAACA TGCTCAATAT 
    CATTTGATTG AATAGTTGAC CCANCTCCTT GTTGTTTGCA GAAACCCTCC 
    NCTTNAANNN GGNNTTNNTT NNCNANNGCN NNCNTNANAT NNCNNNNNCN 
    NNCTTTNNCT ANNATTNNNA ANNNNNNNNN CNNA

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR