1. Home
  2. Mutant Lines
  3. 54-0998-1

54-0998-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 16152422 [Map]; Strand: c
      • AT1G43005.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 182; Region: intergenic
      • AT1G43010.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -1187; Region: intergenic
    Flanking Genome Sequence: 54-0998-1 - 3-prime edge 
    GGGGGGGGAA AAGNGGCNGG NNCGNCNNNN CNAGACAAAA AAAAANTNAA 
    ANNNNGNNCT NNTTANNGGG AACGGAGTNT NTTNTCGACC GTTACCGACC 
    GTTTTCATCC CATNTATACA TGNGTNTTAG CGTAATTCGA NAACNGAAAG 
    NGAACAGAAA CTAAAGNTCT CATGAAGAAG ATGAGGATCA AGCTCGAACN 
    ACCCCGGGCC GGNGACGAAC CCGNGCNCTG GGACGNACNA CGCTANCGNG 
    ATCNGNNNCG AACAANGACG CNCANGCNAA AACTANGNNC TTNGGGNCCG 
    CCNCAGGCCC CGCANNGNNC NGNGGNANGG CCTGAGACAC GGGCGANGGN 
    CTNANGNCTN TNANNGGCNN NGNGGNGNNA GNCANANCAN NNNCGAGAGA 
    CCNGCNNCNA NCAGCCNGAC ATNNAAAACA TACANANAAN TCANGCANAN 
    NCACCACNNC NANAGGGNAN NAGNAAANNA GNANCANCGA TTGANCNCNC 
    NANGNNNNAA ACCNNNNNAT ANACGANANA NNAGNNNANN AAANNNGCGA 
    NGCANAANGA ANATGNGGNN CAGGCACACA CAAAAAGGNN ACANANNACN 
    NNCATNNAGG CACNNCNNGC ANCGCACANA NCNCCGCGCN NANAGANGNA 
    CNNGGNGNGC NGTNCGNGNC GGNGTCGCCG TCCNCNCCNT NTANCGACGN 
    NCNTANAGTN CTCGGNGNNG NNCNGAGTAT NNNTAATGGC NCCTNNGNCN 
    AGNGGCCNNN ACGGNCCNNC TCATANCACA ACTNTNCCAN ANAGNCNNNT 
    AGACNNNNCC GCGTCGNCTT AGTCCANNNT NNANANCNTC CCANANCCAN 
    AAATANACNT NTCNTTNCAC NATNCGNTNN CGNCCNTGTN ATNNNNNANN 
    NCNCANTNNC NNGCAAANCC NAANAGGNNC ATANGAGAAA CANCNTNCAN 
    NNCNCNGNCN NATAAGAAGN CNCGNNACCA GNACGNACNA GGAAANNTAN 
    ANNANNNACC GAN

AT1G43005.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G61060.1); Has 259 Blast hits to 220 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G43010.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G28020.1); Has 605 Blast hits to 542 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 603; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR