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Mutant Lines
54-1000-1

54-1000-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 16152474 [Map]; Strand: c
- AT1G43005.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
  Distance: 234; Region: intergenic
- AT1G43010.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: -1135; Region: intergenic

CNTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATCCC ACATATAACC ACTCTAATCT TATCCTATGG 
AGTAATGTAT TTACACAAAG AATAGCATAC TATACGATGT AACCAATTCT 
GTTAATTCCA GGAATCATAA CCAAACAAAT AAGAGAAATA GTAACNTTCA 
AAAATATCAT TAAAATACGA AACAAAAACA TTAAGGCAGA GACAAAGATC 
ATGTTGATAG TTCTATATCG AACCCAAGAA GTAAAATCTT ACATAAGAAG 
ATCCCTTTAC ATAAGCTTCA ATTCTCCTAC AAAGTTTGGA AATGTGTGAA 
CTTCATTGTA CTCCACATAA TCAAGTCCTG GAACTCGAAG GCTTACACTT 
GTAATAATGT TTTTCTCGA

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 16152533 [Map]; Strand: c
  - AT1G43005.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: 293; Region: intergenic
  - AT1G43010.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: -1076; Region: intergenic
Flanking Genome Sequence: 54-1000-1 - 3-prime edge
```
ATTTATACAT GAGTATTAGC GTANTTCGAG AACTGAAGTT GAACAGAAAC 
TAAAGTTCTC ATGAAGAAGA TGAGGATCAA GCTCGAGAGA ATAAGAATAT 
TAGAATTGTT TCTGTTAAGT GTAAAATGTG ATGTACAAAG TGTTTATATA 
CACGATTATA ACCTCTNTGC TACTCCACTN
```

AT1G43005.1

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G61060.1); Has 259 Blast hits to 220 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G43010.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G28020.1); Has 605 Blast hits to 542 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 603; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR