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54-1110-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75144 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: intron1 (5UTR)
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: intron1 (5UTR)
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -376; Region: promoter
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -376; Region: promoter
    Flanking Genome Sequence: 54-1110-1 - 3-prime edge
    CCCACAGGTT CGTAGATTCC ATAACCTTGG ATTGTGTTTT CTTTTTGCTT 
    TCTCGGCGAC AAATTCCTCC GATTTTAGTG AACATGTCTC TGATTTTGGT
    GTCCTGTGGT GGATCTGCCG GAGCAAGTCT TAAACTTGAC TTGGACTGTN
    TTTACTAGCT AATTCTGGGC GCTATTTCGT CTTCCTTGTT TCCATTTCTA
    TCTCTTTCTC TCTGGCCAGT CCTCATATGT TATCATTTCC TAGCTTTGCC
    ACTACTCATT ACTTTCCCTT TATCGTGTTT ATATCTTAGC CCTGATGGAA
    GCAGACAACG GAGGCCCCAA TTCTAGTCAT GCATCCAAAC AACGTCTGCG
    TTGGACGCAT GAGCTACATG AACGCTTCGT TGATGCCCGN TGCTCAACTT
    GGGTGGCCCT GATANGTAAA GTTTCCCTTT TTTCTTGNTA TANTCTATGG
    GAAAAATTTA AGTAACNTCA NGTTNTTCCC TCATCAAANA TNNGGGGGGG
    GAANAANTAT GNCACCCCCA ATTTTAATCA AAGTGGGGNC GNNNNGNAGC
    TNTAANTANC ATCCAAGGAG AAGGGAAAAA CCTAANGNNG TNGNTNNCCT
    NNNAAGGGAA ACCCNCNNNA AAAAANTNNT NNNTTNNCCC CGTGNNATNN
    ATNNNTANAG NNGNGGGNTN NACCCNCNGN NNNANNGANA NNNNAAAAAN
    AAAAANANGN NGAAANNNNN NAANTNNNCN ANNNAANANA
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75260 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -260; Region: promoter
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -260; Region: promoter
    Flanking Genome Sequence: 54-1110-1 - 5-prime edge
    CNTGTGGGTG GTGGATCTAT ACACNACGCC CCTCCNTTTT CGGAACTTGC 
    TCTTCTCCAA NCTAAATCTT ATCTGAAATA GAANATATTG TGTTACAGAC
    TAGTTTACTG AGTCCGGTGG GTTACAGGGC GGGCGGCGAT GGAGCAGATT
    TTTTTTNNAA AAAATTCCAG TCTNCTTCTT ATCGCTCGAT CGACGAATTC
    CAGGCAGTGG CATTGACTAT TGCTGCATTT CTTTCTGGGT AAGCCGGGCC
    TCTCGGTATA GGCCCAAACC ATTCTAAGGC CCAAACCATT ATATTAAGTT
    GGTTGGTCCA CCAAAGTCAG

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.2

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.1

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.2

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR