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54-1133-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30084711 [Map]; Strand: w
      • AT1G79980.1 - [+] show detail - pre-tRNA
        Distance: -642; Region: promoter
      • AT1G79990.1 - [+] show detail - structural molecules
        Distance: 0; Region: exon2 (CDS)
      • AT1G79990.4 - [+] show detail - structural molecules
        Distance: 0; Region: exon2 (CDS)
      • AT1G79990.2 - [+] show detail - structural molecules
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-1133-1 - 5-prime edge 
    TTCCTCGCCT TAGTCTTGTC TACTTCTTCG ATTACGCTAC TCTCANTACT 
    TCCACCNTCA CCGGTTGGTC TATTATTGCC TCATTCCTCT TCTCTTCACT 
    CGCTGGGTAT TTTGCTTTGC CCCCTAGTAA TAGTATCCAT CCATTTATTT 
    CCCTCTTTAT TACTAGTCTT TTCAGATTCC TTGTATTCAT TTTAATTGGC 
    AGGGCTGTGT ACATGATATT TTTGGTGGAG CGAGCACGGA AATGCTTAGA 
    TTTCTCTGCA ACTCTCTACA TCATACATCT CTTCTTTTGC ATCATGTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30084589 [Map]; Strand: w
      • AT1G79980.1 - [+] show detail - pre-tRNA
        Distance: -520; Region: promoter
      • AT1G79990.1 - [+] show detail - structural molecules
        Distance: 0; Region: exon2 (CDS)
      • AT1G79990.4 - [+] show detail - structural molecules
        Distance: 0; Region: exon2 (CDS)
      • AT1G79990.2 - [+] show detail - structural molecules
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-1133-1 - 3-prime edge 
    AACACGAAGG CCAAGAAAGA CCATGGTGAA GAGTCCAAGA GTGAGATAGT 
    AAGAGCATTG GAGGCAAATA ATCTGGCCAA CGATAAGCCA AGGGTCCCAT 
    ACAGCTGTGC CATAGAACAT GGCTGCTGCA GCAAATTGAT ACACCAAAAT 
    TTAAGTGTCC CTATATCAAA ATTCCCTATA TCTCTACCTA AACAAAAACT 
    CTGCTGCAAT AATCAAATAC ACAGCTAACG AGATCTAGGA AATCCCTAGT 
    TTCGATTTAC ATCCTCAATT ACAGATCAAT TCGGAAAACC CACCTAAGAT 
    CACGGAAGGC TAGATTCGCG AAAGGGAGAA ATCAAACCGG ATC

AT1G79980.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Arg (anticodon: TCG)
Link
InterPro Scan - TAIR

AT1G79990.1

Model type
Protein coding
Short Description
structural molecules
Computational Description
structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, endomembrane system, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), Integral membrane protein SYS1-related (InterPro:IPR019185), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 74874 Blast hits to 32688 proteins in 816 species: Archae - 58; Bacteria - 8441; Metazoa - 30042; Fungi - 16255; Plants - 9898; Viruses - 0; Other Eukaryotes - 10180 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79990.2

Model type
Protein coding
Short Description
structural molecules
Computational Description
structural molecules; LOCATED IN: endomembrane system, COPI vesicle coat, Golgi membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Integral membrane protein SYS1 (InterPro:IPR016973), Integral membrane protein SYS1-related (InterPro:IPR019185); Has 294 Blast hits to 294 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 83; Plants - 40; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79990.4

Model type
Protein coding
Short Description
structural molecules
Computational Description
structural molecules; LOCATED IN: endomembrane system, COPI vesicle coat, Golgi membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Integral membrane protein SYS1 (InterPro:IPR016973), Integral membrane protein SYS1-related (InterPro:IPR019185); Has 294 Blast hits to 294 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 83; Plants - 40; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR