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54-1152-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26410156 [Map]; Strand: c
      • AT5G66030.1 - [+] show detail - Golgi-localized GRIP domain-containing protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66030.2 - [+] show detail - Golgi-localized GRIP domain-containing protein
        Distance: -268; Region: promoter
      • AT5G66040.1 - [+] show detail - sulfurtransferase protein 16
        Distance: -364; Region: promoter
      • AT5G66040.2 - [+] show detail - sulfurtransferase protein 16
        Distance: -374; Region: promoter
    Flanking Genome Sequence: 54-1152-1 - 3-prime edge 
    CAAACAAGGA ATCACGATTC CGAAAAATTG GATCGGATCT CAACCCAAAG 
    GTTAAAACGT CGTCGTCTCT TTCCCGTCGA TCAGTGAGAC GGTAAAACGT 
    TGATCTGATC GACTGACGAA GAATGGTAAG AATTGTGTAA AGGGTGTTTT 
    ACTAATGAAT AATTTCATTC AGAACCCTCA TTTATTATAG TATTTCATGT 
    AAAACCTTAA AACTTTTGAA AATTCATCAA GTAAACCCAC GACGAGGTTA 
    AATAAAATGA TGTCGTTTTG GAATGGTAAT ATGAAAATAT GAAGGACAGT 
    CCGAAAACAG CTTAGCCCAG AAAGCAGCAC CTTCGGGCCA TTATGTATTT 
    GTAATATATA GCCCAATTAT AATCACTTTC CCAACTAATT TATATAAAAT 
    GAAATTATTG AAGTCTTTGT CCAGTCAAAT ATAATAATAA GCCATTGAAA 
    AAAATGGCGG AGGAGAGCAG AGTCCCATCA TCGGTGTCGG TAACAGTCGC 
    CCCCGACCTT NTTNTANCCG GCCACCGCTN TCTANACGTC AGGTAACNCC 
    CCCCCTGTCT CTTTTGACAA TTTCATTCAT CACATANCAT CTTTAGGATC 
    TTGATGTATG GGGATGATGA TNTAGGACTC CCAAAAAGTT CANTCANGGA 
    NATGCCTGTG GGGGGGATNA ACNNGCCCTN CNTGAATNAA GGGGCCTNNN 
    GGTTTGTNGT TNTTGGGTN

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26410068 [Map]; Strand: c
      • AT5G66030.1 - [+] show detail - Golgi-localized GRIP domain-containing protein
        Distance: 0; Region: intron1 (5UTR)
      • AT5G66030.2 - [+] show detail - Golgi-localized GRIP domain-containing protein
        Distance: -180; Region: promoter
      • AT5G66040.1 - [+] show detail - sulfurtransferase protein 16
        Distance: -452; Region: promoter
      • AT5G66040.2 - [+] show detail - sulfurtransferase protein 16
        Distance: -462; Region: promoter
    Flanking Genome Sequence: 54-1152-1 - 5-prime edge 
    CTTGTTTGCG ACCTCTCTTT CTCTCTGTTT CCACACTCTT CTCTAATCCC 
    TCACCTCAAG GTATGCTTCT TCTCTGGCAC TGATTACAAT CAAATCTCTT 
    CTTCTCTTTG CGTTGCTTTT GCTGGTTTAT TCGAATTTCA CGACTTGGCT 
    CCTTTCTCTT TTGATTGTTA ATTCAAATCC CGATTTTGCG CTTACTAGTT 
    GTTTCTACTC TCGTCGCTCA TTTGACTGGG TTCATCTTTC TGACATCTGC 
    TCTGCCAAGA TGTCCGAAGA CAAGGAATCT GATGTGGTTG CAGAAGAAGA 
    GGAGAGCCAT GTGATCCAAG AAGATAAAGA GTTAAATGAT GCCTNCAACG 
    AGACTCTGAC AGAAAATGGT GATCAGCTAC TCCAAATGAT TGCTGAACTG 
    AGATTAGAAA TGACTTTCTC AGATCCCAAT TTGANGGACT CAAGGATGAA 
    GTACCGCAAG GNAGGNCTNT CCAAAAAGCT GGCAAGGGGA ANCGGACTCT 
    GCTCANCTGA AACAACNTNC AAGAACAGGN CGGATAATTN AACAAAAAAA 
    ATTGNTGTGG AAAAAAAAAA ANNNAAAGGG GGGGGNCNNN NNCNAGNGGG 
    NNCNNAAAAA AANANANNCC CNC

AT5G66030.1

Model type
Protein coding
Short Description
Golgi-localized GRIP domain-containing protein
Curator Summary
Involved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in AtGRIP is crucial for Golgi localization.
Computational Description
ATGRIP; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053), GRIP (InterPro:IPR000237); Has 226787 Blast hits to 107130 proteins in 3750 species: Archae - 2735; Bacteria - 54789; Metazoa - 91225; Fungi - 18234; Plants - 12767; Viruses - 906; Other Eukaryotes - 46131 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66030.2

Model type
Protein coding
Short Description
Golgi-localized GRIP domain-containing protein
Curator Summary
Involved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in AtGRIP is crucial for Golgi localization.
Computational Description
ATGRIP; CONTAINS InterPro DOMAIN/s: GRIP (InterPro:IPR000237); Has 226693 Blast hits to 107013 proteins in 3750 species: Archae - 2739; Bacteria - 54726; Metazoa - 91166; Fungi - 18242; Plants - 12768; Viruses - 908; Other Eukaryotes - 46144 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66040.1

Model type
Protein coding
Short Description
sulfurtransferase protein 16
Curator Summary
Encodes a protein with thiosulfate sulfurtransferase/rhodanese activity in vitro, however, it is likely to use a substrate other than thiosulfate or 3-mercaptopyruvate in vivo.
Computational Description
sulfurtransferase protein 16 (STR16); CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT4G35770.1); Has 3621 Blast hits to 3614 proteins in 1089 species: Archae - 47; Bacteria - 2736; Metazoa - 68; Fungi - 45; Plants - 236; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66040.2

Model type
Protein coding
Short Description
sulfurtransferase protein 16
Curator Summary
Encodes a protein with thiosulfate sulfurtransferase/rhodanese activity in vitro, however, it is likely to use a substrate other than thiosulfate or 3-mercaptopyruvate in vivo.
Computational Description
sulfurtransferase protein 16 (STR16); CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT4G35770.1); Has 254 Blast hits to 254 proteins in 60 species: Archae - 0; Bacteria - 74; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR