1. Home
  2. Mutant Lines
  3. 54-1186-1

54-1186-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16043748 [Map]; Strand: w
      • AT2G38290.2 - [+] show detail - ammonium transporter 2
        Distance: -1365; Region: intergenic
      • AT2G38300.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 212; Region: intergenic
    Flanking Genome Sequence: 54-1186-1 - 5-prime edge 
    CGTGANNNCN NACAAAATCG GNTATACGAT AACGGTCGGT ACGGGATNTT 
    CCCATCCTAC TTTCATCCCT CCGTCTATAA CATGTTTTGG AACTACAAAA 
    TTGTCCATGT NCTGTTCGGA TAANCTACGA AACCAAAATT TTTGTACTAT 
    TTACCGTAAA AGTCTCATCT ACAAATGAAT GAAGCTCACC AGCAGAGATA 
    CTCTAATCGA TGTAAATTTG TTGTTATATG TATATGTAAT TTTCATATAG 
    TATATTGCTA TGAGAAGACA AAAGATCGAA TCATTATGAT GTGGCTAGTA 
    ATATTTGTNT ATATATGNGA TGATACAAAT TGGCGGTATC AAACAAACTC 
    AAGACCGTTA ATATAATCAA ACATTNTTGT TTCCTTTCTA ATAATAAAGA 
    AAATACATGA NNAATGATAA ACAACANCGA CACTGAATAT TAAGATATCG 
    GTAAGTACCC TCAAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16043697 [Map]; Strand: w
      • AT2G38290.2 - [+] show detail - ammonium transporter 2
        Distance: -1314; Region: intergenic
      • AT2G38300.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 263; Region: intergenic
    Flanking Genome Sequence: 54-1186-1 - 3-prime edge 
    TAATAGTAGT GTTTTCAATA ATTTCCAAAA TCCATCTTCA CTCATTTTTC 
    CCTTTTCAGA GACATAGTGA AACAATTTTA CACTATGCAA ATCCGAAGCC 
    AATTATTTTT GAGGTTTTTA CTATATGTGA ACAAGATTAA TACTTAAACA 
    ACAAGACACA CCTCGTTCTT TGTAAATATT AAAGAGGTTA AAGATCATAA 
    TACAAAAAAA AACATANAAA AANTTCACAA ATCATCAAAT CTTTNGANTT 
    CATTATNCTA NATAAAATTT NATCTCGTGA AATGTTTATT GTATAAGGAT 
    GTGATTANTT GCAAACCAAA A

AT2G38290.2

Model type
Protein coding
Short Description
ammonium transporter 2
Curator Summary
encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.
Computational Description
ammonium transporter 2 (AMT2); FUNCTIONS IN: ammonium transmembrane transporter activity, high affinity secondary active ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, response to nematode, cellular response to nitrogen starvation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Blood group Rhesus C/E/D polypeptide (InterPro:IPR002229), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;2 (TAIR:AT1G64780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G38300.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G40260.1); Has 1661 Blast hits to 1657 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 4; Plants - 1609; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Link
InterPro Scan - TAIR