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Mutant Lines
54-1203-2

54-1203-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 4041 [Map]; Strand: w
- AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
  Distance: 0; Region: intron21 (CDS)
- AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
  Distance: 0; Region: exon20 (3UTR)

GCCACCTCTT CTCTTANGTN TGAGTTTATA AGTTATCTAA CCCTCTGCTG 
ATTGTATCTA TTAAAGCCCA TTTTGCTACA TCAATTTCTG AAATTTGAAA 
TGTATGATCT ACTCTCATTG ATCAAGTAAC TTTGAATTAT TTTGTGTTGT 
AAACATATCT AAAGGTTTGA TGAANTTNNT TTAAGAAATA ACATTTATGC 
TATATATGAT GCTATGTTGA TTCTGAAAAT CACACAATAA ATTTGTTTAA 
AGGGGGTAAA CAAATTTACT TAACTCTCTC TCGCTATTTA GTGA

5 prime edge [+] show sequence

Chromosome: 4; Position: 4160 [Map]; Strand: w
- AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
  Distance: 0; Region: intron20 (CDS)
- AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
  Distance: 0; Region: exon20 (CDS)

GTGGGGTATG ATTTATCTTC AGCATGAAGG TGATTTACAA GCACCGATTA 
TAGATAAGAC TCTTTGCCGA AGTTCATGAA TGACCTGAAA AATGAGCAAA 
CCAAGAAGGC TTAATACAAA AGACCAATCT TTTTGAACCG AATAATTATA 
GAAAGAGGAA GTCGACGAGA ACGAACGGAT TTGGAAGAAG AGAGCTTAGC 
CCATGTTTGG ATATGGGCAC TGCTGGTTTT GAGGTGAGAA GAGTAGGCAG 
CTTCTGCGTT TATGAAGTAG ACTGAGTTCT CTACTGCCTC AGCAACCCAA 
ATTTCGTTTG TCNCATCCTT TGCTCTTTTA ATTAGATTGC AAAATCCGAC 
CTGCCAAAAA TTAAGACCCA TAACAAGCAT ATATTTTTCA AAATTTAATC 
TCTTGGTGCA TATTCTCTCT GTGTTAA

AT4G00020.1

Model type: Protein coding
Short Description: BREAST CANCER 2 like 2A
Curator Summary: Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description: BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00020.2

Model type: Protein coding
Short Description: BREAST CANCER 2 like 2A
Curator Summary: Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description: BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link: InterPro Scan - TAIR