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54-1210-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22657996 [Map]; Strand: w
      • AT5G55940.1 - [+] show detail - Uncharacterised protein family (UPF0172)
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-1210-1 - 3-prime edge 
    NTGAAAACGG NNNAGGTNTT TTACCGACCG TTANCGACNG TTTTTNTCTC 
    GCGCANCGCG CCGCACGTAC NGCTCTCNCC CTNCNCGCGC GGATCATCAT 
    GCCANGNTCG ATTNNNCTTT CAGTTGACTC AGTGAGTCGC CGATCGAGTT 
    AGAAATGGGA ATGGGAAGTA ACGGANAATT GAAGTATGAG ATC

AT5G55940.1

Model type
Protein coding
Short Description
Uncharacterised protein family (UPF0172)
Computational Description
embryo defective 2731 (emb2731); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0172) (TAIR:AT5G51620.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR