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54-1218-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1026434 [Map]; Strand: w
      • AT4G02320.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: -316; Region: promoter
    Flanking Genome Sequence: 54-1218-1 - 3-prime edge
    AGGTTGATTT GAACTTTCAC TTTTGAGCCG AAAGATAGTT TCTTTAGACC 
    TACTTACTAG GTCTTTCACA TGTTAATGGG CCGAGTTCAG TGGAGTGAAA
    CCCAACACCA ATAGTCAACC CATTAGTTCT TAAATTAGGC ATCAAATTCT
    CTGAACGGTG AGATCTAAAC AATANTNNCC AAAAGGATAT TTCTTTCCTG
    TTACGTTAAA CAAAATTTGA ATTCTGACTG AAATAGTGAA ATCATATATC
    ATTCCATATA CAAATCAAAT GCAAAATTAC TTCTATGTCA CTCTTTTTTC
    GTTCTAGGTT ACCGTTGGAA ATTTATTATA TAAGTTTTTG TTTCATACAG
    CTTCTCTCTT AAAATATTGT ATAATCCAAT GACGACAAAA CCAAAACACA
    TTATTCTCAG TTTGAGCTTT CTCCTACTTT TCTTATCACT CGA

AT4G02320.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02300.1); Has 2764 Blast hits to 2709 proteins in 322 species: Archae - 6; Bacteria - 570; Metazoa - 1; Fungi - 200; Plants - 1958; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR