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54-1219-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26460690 [Map]; Strand: w
      • AT5G66211.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -860; Region: promoter
      • AT5G66230.2 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: -462; Region: promoter
      • AT5G66220.1 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: -487; Region: promoter
    Flanking Genome Sequence: 54-1219-1 - 5-prime edge 
    GGGANAAACT AACAAAATCC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATGCC GCATGCATGA GAAGCTAAAA CGAATGGTGG 
    ATATAACTAA CATATACAGC TTATACTATA CATGGTATAC AAACAAAAAT 
    GATGATCCAA GCTAACCTAC TCACTCATAG TTGTCCATTT ATTCTTTCTC 
    AAAACAAAAT CCCATACACC AGACCTCTAA GTTCTAAGTC TACGACTACG 
    AGCATAGTCA CAATGTCTCT CGCCAACAGT CTCTTATCAT CAAGTAAGTT 
    TCATTATTTT CTCCCCAATA TCACTTTGTC GCATGCATTT CCATCCAGTA 
    CTATTAATTG AATCTCTTTT TTTTTGGTTG AAAATATTCA TTTCCCCATC 
    CAATCTCCTT TAAAAATTAA AAAAAAATNG GATTTATTTN TTTCAGTAAA 
    AATGAAAAAG TNGTAAATTA TAGNCTTNAT TAATCTTCAN GGACCTTAAT 
    TATAAATAAA NGTCAAAAAA ANGAAACTAN ACTTGAGTTG GTCTTCCTCG 
    TCGCCCATGC CGTTGCCTTC CGTGACGCCA CTCCACGTNG ACGCATTTAC 
    TTTTCCTCCG GCTGTTGAGT CGCCCGCTTC CCACAAAANA CTTTTCCTCG 
    GGGGGGCAGG TTAGCATCAA TAGTCTGTCT ATACAATTAA TGCNCACAGC 
    AGCNTTATGN GGCTAATTAC CTTTAATCAC NCAGGGATCC NATGGTTTGA 
    TNTTAAAGGC AAGTTCGNGA TG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26460735 [Map]; Strand: w
      • AT5G66211.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -905; Region: promoter
      • AT5G66230.2 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: -417; Region: promoter
      • AT5G66220.1 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: -442; Region: promoter
    Flanking Genome Sequence: 54-1219-1 - 3-prime edge 
    CGCAAATTGA AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT 
    CATCCATGCC GTGCACACAC CAGCGATATG CTGTAATGAA AATTTTGAAG 
    TTTGAGGAAA AAAATGATTG GGCCCAAAAG ATGAAAGCGT ATTGGGCCCG 
    GTTGGTTGGG CTCACTAGTG ATCATAATTG GTGAGAGGGA TC

AT5G66211.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66220.1

Model type
Protein coding
Short Description
Chalcone-flavanone isomerase family protein
Computational Description
Chalcone-flavanone isomerase family protein; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT5G66230.2); Has 378 Blast hits to 377 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 378; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66230.2

Model type
Protein coding
Short Description
Chalcone-flavanone isomerase family protein
Computational Description
Chalcone-flavanone isomerase family protein; FUNCTIONS IN: chalcone isomerase activity, intramolecular lyase activity; INVOLVED IN: cellular amino acid derivative biosynthetic process, flavonoid biosynthetic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT5G66220.1).
Link
InterPro Scan - TAIR