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54-1227-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 94138 [Map]; Strand: c
      • AT2G01130.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 54-1227-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTG TCCATTTCTG TTTCTTTTTT GCAGTCATGC 
    ATATGCTAAG GTTGTTGTCT TCAGTAAGAT CCCACTCCCC AACTATAGGT 
    TTGATTTAGA TGACAAGAAG CCACAGAGGG AGGTATTATC CGCTGCTCCT 
    CACTCTCTTC TCTTACACTT AACGCAAGAC GGCTTGTTTT TCTTTAAAGA 
    GCAGATATAT ACAAAAATAT NNACAGGTGA ATTTGCATAC TGACCTTCTN 
    CAAAGAGTTG AAGCTTACCT CACAGAATAC CTCAGTAAAA GCTCTAATAG 
    GATAGATAGA GNCCCTGCCA ATTNCGTCTC AAGAACTAGT AGCATTAGCA 
    GTACTGANGA ATGGTTTTCT GAGCAACCAC TGNCCANGTT TGNCACCAAA 
    ATTCTTTGGC AAAGGGAGTN NNCAAAATGT GTGANCGAAA AGAATATTGG 
    CAGGGNNCTG AAAAANANAA AGGGGCGGGG GGNGGNTCTT TATNTAGGCG 
    GNTCNNAAAG ACCATNNAAA NNNGATGTGT TNCCNCNGAT TANGNTNGNG 
    GGGAANGCCC NNAAANGNGG GNNCCNNAGN GAAAAAAAAA AAGGGTGGTG 
    NGGNAAGGGN ANNCNNCNNN GNCNGCCNGG GGGNGNGAGN GNNTTNGNGG 
    GGGNNGNAAN AAAAAAAAAA AAANGNGGGG GAAAAAAAAA GGNNGNNNGG 
    NGGNGNCCNC NNNANNNNNG GGNNNGNGNN NNNAANANAA AAAAAAAAAA 
    NNCNNNNNNN GGGGNNNNGG GN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 94142 [Map]; Strand: c
      • AT2G01130.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 54-1227-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTAATGGT 
    TATACTAGTG AGAAAGAAGA AAGAAAGGAG CAGCATGATT GATGTACCTA 
    TACAATCCCA GGGTTGTAGC CAGAGCAGCA AGTTTATCAA AATCCCGTCT 
    ATCTTTTTTC TCCCTGGAAA TAACTTCTTG CTTTAAAGAA TCTTTCAAAA 
    GCATTGAAAA TCTCTTATTC CAATCATCCA AGTCGGCACA GTGAAAGGTA 
    CCCTCCTGCT GCAAATTGAT ATGGTTCCAG TAGAAAGATA AAGGGATTTT 
    TATAAAATAC TACTCGA

AT2G01130.1

Model type
Protein coding
Short Description
DEA(D/H)-box RNA helicase family protein
Computational Description
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G48650.2); Has 13137 Blast hits to 8990 proteins in 1526 species: Archae - 10; Bacteria - 5358; Metazoa - 2929; Fungi - 1766; Plants - 978; Viruses - 93; Other Eukaryotes - 2003 (source: NCBI BLink).
Link
InterPro Scan - TAIR