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54-1238-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1503718 [Map]; Strand: c
      • AT1G05190.1 - [+] show detail - Ribosomal protein L6 family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1238-2 - 5-prime edge 
    GTNATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCGT CATCTTTTCA ACCCAGGTAC TTTTCATATA 
    CTACAAACCA TAGAGCTTCT TCATTCCGCT AGGGTTTCGT TTTCTTTACT 
    TGGCATTTTC TACTCAAAAA TCTCTATAAA CTTGTGTTCA TGAGCCTCCC 
    AAGTATAAGG AATCTCTTTG AATGGGTTAT TTTTATCTTT TTAAATCGAT 
    GGCAATGTTG AATTGGTTAT GGACTCTTGA AATTGTGGAT TTTTATTTTG 
    GGAATTTGAA TGTGTTATGC GGAACTCACT GTGTAAAAAG CAGGATTCTA 
    GAGGGGTTTT TAGCCATGGA AACTGAAAGT TCTACAAGAA TGTTTCTCTT 
    CCTTAATCTA ACGTTATCTT TGTTCCAATA ACAGTTTCTG TGTATTGGTT 
    TAGATATATA TCTGGTAGAG TTTTACTTTC TTGACATGTT TTATCTGAAG 
    ATAGATAGAT AACTTCCCCT TTGTTTTAGG TCAGCATTTT TGGGAGATAG 
    AAATGTGTTC AAGGTCTCAA GCACACCTTT TGCTCAAGTG GGTTACTCCA 
    GTAAGACCAT TGAGTGCAAA GAATCAAGGA TAGGAAAGCA ACCGATCGCT 
    GTACCTTCCA ATGTAACCAT TGCATTGGAA GGTCAAGACT TGAAAGTGAA 
    GGGTCCATTA GGAGAGCTGG CTTTAACTTA CCCACGCGAA GTTGAGCTTA 
    CAAAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1503757 [Map]; Strand: c
      • AT1G05190.1 - [+] show detail - Ribosomal protein L6 family
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-1238-2 - 3-prime edge 
    CTTGAAANNA TAGANGNTTT CATTCGTNTG GATTTTGAGG ATTGNACCGG 
    CTAATCCTTG CNNCCCAGTG AAGATGATNA GAATAAAGCA TACACNCGNT 
    CCGNNCCGTA GACNACTCAT GCCNTNTNAG CTTTCGTGTA NTCCCCTCTT 
    TCAAATCATG ACGCNTCACG GNCCATTAGC TCACTATNTN CGGCCCATTA 
    CTTTTAACCA TCGTNCTATG GGCCAATTCA TTATTTGTGT AACCCATNNA 
    TCTATATTGA TCATGGNCTA TTATCTCACT GNTTCTAGGC CCATTATTAT 
    TATAACTGCT CACAAAATGC ACCCAATGAA CGNGGAGTTT CGATTAGATT 
    AATGAAGCCG ATAGATTATN TATCAGNAGA TGCGTNNGGA TTAAAATTGC 
    GNATCTTTCC NGANAAGGAN GNTNTNCCGA TNAAATACNN TAAANGCGNG 
    GCNGNTNGAA ANTACTCTTT NACAGACNNA TNAAATAATG ANATGGGCCN 
    CTNNNCATCA GAAAANCCAN NCNACANTNT TGAGANATAT NCCAAGAAAA 
    GAAAGAAAAA CTGGANATNA NATCTNCTNG GNACANATTT TNATCGGGNN 
    CAAAACACTN NTTGCNNCTA AANTGTGAAA ANNTNNGNNA NCCNACAANA 
    GATATGNGNA TTNNAGNGGG ATNANTNTAA TTNNGNGGTN NACAANNTAN 
    CTCGGGAAGG NNNTNANTAC CGANANTTAG AAANAGANG

AT1G05190.1

Model type
Protein coding
Short Description
Ribosomal protein L6 family
Computational Description
embryo defective 2394 (emb2394); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, bacterial-type (InterPro:IPR019906), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site (InterPro:IPR002358); BEST Arabidopsis thaliana protein match is: ribosomal protein L6 family protein (TAIR:AT2G18400.1); Has 8498 Blast hits to 8498 proteins in 2848 species: Archae - 226; Bacteria - 5468; Metazoa - 15; Fungi - 189; Plants - 125; Viruses - 0; Other Eukaryotes - 2475 (source: NCBI BLink).
Link
InterPro Scan - TAIR