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54-1247-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26425926 [Map]; Strand: c
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -520; Region: promoter
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1247-1 - 5-prime edge 
    CCTTTGAGAG CGACACTGCG TAGGGAGAGA AGCTGCTGGC GAGGTNTAGA 
    TCGAAGAGAA GAAAGAGGGT NCAGCCGCAG AGGAAGAAGA AGAAGAAGAA 
    GGAAGTGTTG CTTGCTTGGA GGCCGCATCG AGAACAGAAA CGGCGGCTAT 
    GGAGTGAGCA GATGCCATTG AAGTTGCGAC GGAGTTCAGC AACTATCGCG 
    ACGATTCCAG AAAACAATTC CAGAAAACAA ACTTTTTTTT TGTTCTCTTA 
    TTTTGGTTCT GCCCACGGCT TGGACTAGAG TATCGGTGAG GGGCTTGAAT 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26426042 [Map]; Strand: c
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -636; Region: promoter
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-1247-1 - 3-prime edge 
    CTCAAAGGTA TCTTCTCTTC TTTTTCTCTG TTTATTTGGA ATACGAGTTG 
    CTTCTCCTAA ACGTAATAGT CCAATTCTAC CTTTGTTGGG TACAGTCGCA 
    TTTCCAGTTT GAATTTTAAT ATAGTTTGGG ACAACGAAGA GGGGAGTGAT 
    TCAAATTAGC ACAATCGTAA TGAGTAGTTG TTGATATGGT TAGTTTGTTG 
    ATGAGCCAAC AATGATTAGT TTGTGGTTAG CTTAGGTCGA GTAAAGGCGC 
    AGGCAAAAGA AGCAGAAGCT AGTCCAAGTC CAGTGGGAGT GGGAGACGCA 
    TTCAGTAATG TGAAGCATCT TCTCCTGCCG GTGATTGATC GGAATCCTTA 
    TCTTTCTGAA GGCACCAGAC AGGTTATTGT TTAGCTTGTT ATCTTTTTGA 
    GAACATGTTG ACACCAAACA AAAAAGCTGA TTACACTTAA TTTGATAGGC 
    TGCTGCTACA ACAACCAGCT TGGCAAAGAA GTATGGAGCT GATATCACAG 
    TTGTAGGTAA GAACAATTAG TGTTGCATTA ATATCCCCTT ATGTATCATA 
    TGAATTATAT AGCCGTGTTG ATCATCTGTG ACCACCGTTG TTGATTCAGT 
    CATTGACGAA GAAAAGAGAG AATCATCTTC GGAGCATGAG ACTCAAGTAT 
    CCAACATCCG GTGGCATTTG TCTGAAGGTA AAATTGAGGA ATTACTTGTA 
    GGAAATTGTA GG

AT5G66080.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR