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54-1248-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 826126 [Map]; Strand: w
      • AT3G03470.1 - [+] show detail - cytochrome P450, family 87, subfamily A, polypeptide 9
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1248-1 - 5-prime edge
    GGGNNAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT ACGTGGAGCG TTATGATTGG TCCGTGACGG
    GAGGCTAAGT CACGGAGAAC GCCTTGGAAA TCGGAGAAGT TGTTTTTCTT
    AAGCCAGATG ATGTTTCCGA TGACCGGAAA ACGAGGTGGT CCCGGTGGGA
    GTTTGTGAGT TGAGGAGAAG AAGATGAGTT TAAGGAAGAT GGAGAAGGTG
    AGAGAGGATA TGATGAGGAA TATGATAGTG GTGATCTCCA TTGTTGCTCC
    TCTTGCTTCA AATCAAAGCT ATTGTTTATT GTTTATAAAG AAAAAGGTAT
    AACTTATATA TGATTAGAGA GATTTGTTTC GATGTATCTT TTTTTAGTTG
    GTGAAAATAT TTTGAATAAT AGAAAGAAAC GAGAGAACGT TTTTTTTTCT
    TTCTTTTTTA TGGAGCTATC TANATTTGGA TTCGTTTGAT AGTTAAACGT
    CAAGTAGCAC TATGATGTTT GGAAACTTTT TTAATTGATA TTTTCTANAC
    CATTGATCTA ATATCGCATG ACTTTGATGT ANATATCTCT GTACACTTGT
    TTATTTTGGT CCACCCAACG AGTTGTGGTG TCATCATCAA ACAAAAATCG
    AAAAAAACAT TTAAAAGAAG AAGAGAANTN CGCNTNTTTA CGAACACGGT
    AAAAAAACAA GCTAAACAAA CATTATGTCG NAGGTCTATA ATCTATAAAT
    TACCTTAN
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 774585 [Map]; Strand: w
      • AT3G03300.1 - [+] show detail - dicer-like 2
        Distance: 0; Region: exon4 (CDS)
      • AT3G03300.3 - [+] show detail - dicer-like 2
        Distance: 0; Region: exon3 (CDS)
      • AT3G03300.2 - [+] show detail - dicer-like 2
        Distance: -60; Region: promoter
    Flanking Genome Sequence: 54-1248-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AAGACCCTTA TTGCTATTAT GCTTCTTCGT AGCTATGCCT ACCTTTTCCG
    CAAGCCTTCA CCATGCTTCT GTGTCTTCTT GGTTCCTCAA GTGGTTCTTG
    TCACTCAGGT ATTGGTGTTA GGATTGGAGT TGTGGACAAA GGGATNCACC
    AATATACAGG ACTTGTCCTT TGTTCTACAA TTTCTGCATT ATNACACGTG
    CTCNNNNTGN AAATNNAGAA ACTTTAANGN TACTTTNTNC ATTATTNNTG
    CATTNTTCCT TGGGNGTNGN ACANAACAAN CGTACGCCAT GAAGAGNCAT
    ANNGNGGTCA NAGTTGGAAN ANNNTGCNGA GACATGGAAG GGGGNGGGAN
    AANAGACGCN AANACGCTAT GAANAATGNN CNCNCAAATN AAANCTCNNT
    ACNGNGNGGG NGANAAAGGG GGGNNGNAAN TNTGGGATTN CCNGGANAGA
    GNAAAAANAA ANNNAAAAAG NGGGGNGGGN CNNCTTNTTN TTNNGNGNGN
    CNGANAAAAA NNAAANNANN CTNGGGGGGG GGNAAAACAN NAAGGANGNA
    NNCNNNAAAA TNAATANTTT TTGANNCNNA CNAATNAAAA AGNNAAANNA
    AAAAAANANN NTGGNNANNC GGANNNCANG CCCNCNNAGG GGGGGNAAAA
    AAAAAAAAAA NNGGTNTTTT NCCCNNATNT AAAACANNTT NAGNGGANGA
    GGGGGNTTCC CNNNNCNNNN NNGNCAAAAC CNTANNNANA AANNCNTCTC
    NNNNNNAAAA AANNGCNCGC

AT3G03300.1

Model type
Protein coding
Short Description
dicer-like 2
Curator Summary
Encodes a Dicer-like protein that functions in the antiviral silencing response in turnip-crinkle virus-infected plants but not in TMV or CMV-strain-Y-infected plants. Involved in the production of ta-siRNAs. Partially antagonizes the production of miRNAs by DCL1. Substitutes for DCL4 to produce viral siRNA when DCL4 is missing or inhibited. Able to produce siRNAs but not miRNAs.
Computational Description
dicer-like 2 (DCL2); FUNCTIONS IN: in 7 functions; INVOLVED IN: defense response to virus, maintenance of DNA methylation, production of ta-siRNAs involved in RNA interference; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: dicer-like 4 (TAIR:AT5G20320.1); Has 12581 Blast hits to 11282 proteins in 2839 species: Archae - 320; Bacteria - 5925; Metazoa - 2075; Fungi - 1253; Plants - 706; Viruses - 26; Other Eukaryotes - 2276 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03300.2

Model type
Protein coding
Short Description
dicer-like 2
Curator Summary
Encodes a Dicer-like protein that functions in the antiviral silencing response in turnip-crinkle virus-infected plants but not in TMV or CMV-strain-Y-infected plants. Involved in the production of ta-siRNAs. Partially antagonizes the production of miRNAs by DCL1. Substitutes for DCL4 to produce viral siRNA when DCL4 is missing or inhibited. Able to produce siRNAs but not miRNAs.
Computational Description
dicer-like 2 (DCL2); FUNCTIONS IN: in 7 functions; INVOLVED IN: defense response to virus, maintenance of DNA methylation, production of ta-siRNAs involved in RNA interference; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: dicer-like 4 (TAIR:AT5G20320.1); Has 11820 Blast hits to 10882 proteins in 2832 species: Archae - 232; Bacteria - 5768; Metazoa - 1870; Fungi - 1100; Plants - 675; Viruses - 26; Other Eukaryotes - 2149 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03300.3

Model type
Protein coding
Short Description
dicer-like 2
Curator Summary
Encodes a Dicer-like protein that functions in the antiviral silencing response in turnip-crinkle virus-infected plants but not in TMV or CMV-strain-Y-infected plants. Involved in the production of ta-siRNAs. Partially antagonizes the production of miRNAs by DCL1. Substitutes for DCL4 to produce viral siRNA when DCL4 is missing or inhibited. Able to produce siRNAs but not miRNAs.
Computational Description
dicer-like 2 (DCL2); FUNCTIONS IN: in 7 functions; INVOLVED IN: defense response to virus, maintenance of DNA methylation, production of ta-siRNAs involved in RNA interference; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: dicer-like 4 (TAIR:AT5G20320.1).
Link
InterPro Scan - TAIR

AT3G03470.1

Model type
Protein coding
Short Description
cytochrome P450, family 87, subfamily A, polypeptide 9
Curator Summary
member of CYP89A
Computational Description
"cytochrome P450, family 87, subfamily A, polypeptide 9" (CYP89A9); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to cyclopentenone; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 87, subfamily A, polypeptide 6 (TAIR:AT1G64940.1); Has 30488 Blast hits to 30273 proteins in 1588 species: Archae - 47; Bacteria - 2858; Metazoa - 11557; Fungi - 5907; Plants - 9145; Viruses - 0; Other Eukaryotes - 974 (source: NCBI BLink).
Link
InterPro Scan - TAIR