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Mutant Lines
54-1249-1

54-1249-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 9521307 [Map]; Strand: w
  - AT4G16920.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
    Distance: 0; Region: exon5 (CDS)
2. Chromosome: 4; Position: 9541298 [Map]; Strand: w
  - AT4G16950.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
    Distance: 0; Region: exon5 (CDS)
  - AT4G16950.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
    Distance: 0; Region: exon5 (CDS)
Flanking Genome Sequence: 54-1249-1 - 5-prime edge
```
CTTCTNCNNN AATCTCATTT CTATCTTGCA GAAAGTATGG ACATCCCATT 
TTGATTGCAG GGAAATTTCT CAAATTCAGG CATCCAGTGA GATCGAGGTA 
CTTGAGAGAT TCCAAGTTGA GACCGGTTGG AAAACTCTCT AGCTTTTTGC 
NATCACTCAT ATCTAAAAAG ATAAGTTTAA TGGCATTCTG AATTGAGGAA 
GGAAATGTCA CCAAAGATTC GCATAGAGCA AGATTTAGTT CCTCGAGGTT 
TATGGCTAAA GAAAGATCTG GAATTT
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 9521185 [Map]; Strand: w
- AT4G16920.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
  Distance: 0; Region: exon5 (CDS)
Chromosome: 4; Position: 9541176 [Map]; Strand: w
- AT4G16950.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
  Distance: 0; Region: exon5 (CDS)
- AT4G16950.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
  Distance: 0; Region: exon5 (CDS)

GGTAGAAGAT TGTTTCTGGA ACAAGAATCT CTCTGGACTT GATTATCTCG 
ACTGCCTTAT GAGATGTATG CCTTGTGAAT TTCGCCCAGA ATATCTCACT 
TTTCTCGATG TGATCGGCTA CAAGCATGAG AAGCTATGGG AAGGCATCCA 
GGTACATTGT TAATGCTATG CTGATTTTTG TTTTCCTTCT ATTATATAAC 
TAATTAAGTA TACCCAAATT TGTTTTTATG GCTTGTGGTC GATCCACGGT 
TATTATGTCT TACATACATA CATAATAATG TTTAATTATA ATTTTAAACA 
TATCTTATAT AATAAATTAA GGTTTTTTTC ATACTCATGC TCTAAAAAGC 
TGACAAATGG CGCTTTATTC TTACGACATG TATCTTCTCG TTTTTTTTTT 
TTNCAAATTA AATCNTNNTT TTAAANCANT TTTTNAAAAA NNCCCTTTTT 
TTTNNNAAAT NAATNAAAAA NNTTTTNTNT NTNCCTTCNN CCNAAAAAAA 
AAAATNCATN TTTTNTTNTN AANCTTTTTT NGCAANNTCG TTAAAATNNA 
ATTTTTACCA ATTTNCNTTA AAATTTTNTT NTTNAATGGN AAAAANAAAN 
NNAAATGGGG NTTCCTTTAA CTTTNTACTT GCNTTGGGCA TCNNAATTTA 
CACNAAAAGG CTTTNTNTTT GCAAAACTAA AATNNTTTTC CCATTTTTCA 
TTTTN

AT4G16920.1

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Computational Description: Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16950.2); Has 33072 Blast hits to 18315 proteins in 784 species: Archae - 24; Bacteria - 2125; Metazoa - 2462; Fungi - 169; Plants - 26873; Viruses - 34; Other Eukaryotes - 1385 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16950.1

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary: Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description: RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33222 Blast hits to 18539 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2568; Fungi - 207; Plants - 26793; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16950.2

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary: Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description: RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33205 Blast hits to 18535 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2566; Fungi - 207; Plants - 26778; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link: InterPro Scan - TAIR