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Mutant Lines
54-1269-1

54-1269-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 16837575 [Map]; Strand: c
- AT5G42130.1 - [+] show detail - Mitochondrial substrate carrier family protein
  Distance: -736; Region: promoter
- AT5G42140.1 - [+] show detail - Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
  Distance: 0; Region: exon8 (CDS)

GTGGTCAGAG AATCGCGAAA GAGTATACGA GAAGTACAAC ATTCGCGGTA 
CCGATAGATC AAGTGTGGCA ACATCACCTA TATCTCAATC ACAATTCTAG 
ACATGAACCG AAAACAACGA CGAAAGCAAA AAGCATAGGA AGCAGTTAGC 
CTTATTTTGA TGAATGTAGA GCTTCATTCT CCGGCATTGC ACTGTATATA 
GCGAATCTCT CGCCTTATTT GCAAATAGTT TGTCATGAAT TTCATGATTG 
TTTAAACTAA TTGATTTAAA TCTGATGATA ACTATTTTAA TATGAAAATG 
GTTAGCCAAC TTCATGCCGT TTAGTTTTTT TTTCTTTACT ACACTGCGGT 
CAGCTTCTGT TTCTCTGAGT ATCATCATTT CCTCTACGAT CGATCTCTGA 
ACCGAACCGA ACCAAATTAT TGGTTTGGTA TATTCGGTAA CCTTTCCCCT 
TAATCAAAAT TACCCGAAGA ACCGACTACC CCGACCTGAA CCGAACACTG 
CGGTTCAAAG TCCCAGGCAA TAAATAACCG AGCGGTCAAA AGTAAAAAGC 
TAAACGGCAA GTTTTATATT CACTTCGGTT AACCATAACC GAATCAAACC 
GAGATTATAA ACCGAAGACC CAGGGCTTGC AATTGCATGG TTCTCTGTCA 
TCAACTTCAT GCCGTTTAGC TTTTTACTTA CTACACTG

3 prime edge [+] show sequence

Chromosome: 5; Position: 16837691 [Map]; Strand: c
- AT5G42130.1 - [+] show detail - Mitochondrial substrate carrier family protein
  Distance: -852; Region: promoter
- AT5G42140.1 - [+] show detail - Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
  Distance: 0; Region: intron7 (CDS)

CTGACCACCA TGTTTCTGCT TGTTGCTCCC TGAATCGTCG CCGGCTACAA 
AAACAACCAA ACGTTTGTAT TAGTTTACAT GTCTAGAATG TAAAAGGATA 
AGAAGTAGAT AGATTCGATA ATGTTACCTA AAGCGCACAC NGTTTGAGAT 
CTCTAGTTCC ATCGCCTAGA GCCAAAAGTG TTATATAAAC ACCAGGTTCA 
TATTGTTCAA TCCACTCTGC CTCCACTTGA GAAGCATTTG AAGCTGATGC 
TGCTGAGCTT CTTGAGTTTC GTCCATCTTC TGAGAAACCA TTACTGATTC 
GGACCCCCTC ACTTAGAAGT TCGCCCATGC TTGCATCTGT GTTTCTTGGC 
GACTGCGAAT TCCGCCAAAG TCCATTCATT GAACGAGCGG GCATAGCCAA 
AGGAGAAGCA AGTGAGGTGT CGCTCATTGA ATCAGATCTT GATTGACGTT 
GTCCATTTGC ATTCGTAAAG TGAAATCCAT TTTGCTCAAA CCCGTTCAAT 
AAATTAGCTG TCCGTGTGGT CTCAGCTTCG TAAGCACCCG GTGGTAGCAG 
CGCAGCTATA TCCTTGACCT GGAAAGACCA AATAGAAATA TTTAGGGAAG 
AAATAAGAAA ACTTAAAGAG GGAATCATAT TTCAAGAATG GATAGATCAC 
ACCGAGACTT GTCTCTGTCG AATACAACAG GGTGCTTAGG AGAGATATAT 
AAGAGAATCA AGTCTAAN

AT5G42130.1

Model type: Protein coding
Short Description: Mitochondrial substrate carrier family protein
Computational Description: Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine carrier 2 (TAIR:AT1G34065.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G42140.1

Model type: Protein coding
Short Description: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Computational Description: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT1G76950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR