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54-1271-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2970716 [Map]; Strand: w
      • AT3G09680.1 - [+] show detail - Ribosomal protein S12/S23 family protein
        Distance: -345; Region: promoter
    Flanking Genome Sequence: 54-1271-1 - 5-prime edge 
    ATACTNNNCT AGACCGGCCG TTTCACACAA ATGTTATTGT TGACTAGGCC 
    AAAGTCCCCA TGCCGTTATC TTTCCATTAA CGGATCCGTT AATTCCGTTA 
    ACACATGTTA ATTAGTTTTC GTCAATACTC AAAACGACGT CGTNTNATTG 
    ANNTCTNAAA TTCCTAAAAT TGATTTCAAA ATCTCTAAAT TCCAAAAAAA 
    CAAATCCTTA ATTCCTAAAT TCCAAAAATC AAATCCCTAA ATTCTAAAAA 
    CCAAATCCCT AACAGCCTCT TATTTTCAGC AATTGGTCGT CGTAATAGTC 
    ATCGTCGTAA AGATCCTCAA GAGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26070988 [Map]; Strand: c
      • AT5G65230.1 - [+] show detail - myb domain protein 53
        Distance: 1336; Region: intergenic
      • AT5G65240.2 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 3414; Region: intergenic
    Flanking Genome Sequence: 54-1271-1 - 3-prime edge 
    GTTTTTATTA TGTTTTATTT GGCCACACAA AAAGTTTACG TATTAAATGG 
    CCATTTTTTA AAGTTCACGT ATAAAACGAC ATTTTTCCCA TTCCAAAAAT 
    GGCGCGTGAT TCATTCGCGG ATGCATATAA TGCGAAACAA AAACTTCATT 
    CATGTTTGAA AGTTTGAAAC CAAAACACCG TTTCTTCTGC TTTAGAGTGT 
    GATCACAAGA TTCAATCAAA ATAATTACCT TAAAACATTA TTTTTAGAGA 
    AAAACAAAAC ATTTATTTAT AAAAAATCTT GAAACTTTTA AATTTATATA 
    TAATATATGA AAAACATGTT CAACTTATAG TTATAACATT AAAACATACG 
    AACCAAAACG ACCGGATACT ATATCCGATT TGTTTTCAAT ATATTTAAAT 
    TTAACACTTA AAATTACCAT AAAACATGAA AAACATGTTG ACTTATGACA 
    CCACAAAACT TGTGAGATGT TGAATTTTCT AACTAGTTTA CATCAAACAT 
    AAAAAATTTA ACACTTAAAA AAAAAAGATA TCATTTTTAA AAAACATCAA 
    GTGCTACAAA ATTAATTATG TGTAAACCAT ATTAAACCTA GAACACCTAT 
    TATGGTTTGA ATGGTTATAT ATCTAACTAG TTTACACAAA AATTAAAATT 
    TTAACNTTTA AAAGAAAAAC AAAAAAATGA TNAAACCTTT TAAATAAAAC 
    CAAGTGCTAA AACTTTAATT ATGGG

AT3G09680.1

Model type
Protein coding
Short Description
Ribosomal protein S12/S23 family protein
Computational Description
Ribosomal protein S12/S23 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, nucleolus; CONTAINS InterPro DOMAIN/s: Ribosomal protein S23, eukaryotic/archaeal (InterPro:IPR005680), Ribosomal protein S12/S23 (InterPro:IPR006032), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); BEST Arabidopsis thaliana protein match is: Ribosomal protein S12/S23 family protein (TAIR:AT5G02960.1); Has 9046 Blast hits to 9043 proteins in 3116 species: Archae - 259; Bacteria - 5143; Metazoa - 487; Fungi - 298; Plants - 975; Viruses - 0; Other Eukaryotes - 1884 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65230.1

Model type
Protein coding
Short Description
myb domain protein 53
Curator Summary
Member of the R2R3 factor gene family.
Computational Description
myb domain protein 53 (MYB53); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 92 (TAIR:AT5G10280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65240.2

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT5G10290.1).
Link
InterPro Scan - TAIR